Tableau information
Concept source: d1k0mb1 amino acid (a.a.) range (ARG204)(GLU234)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG204) (ARG216) H1
(GLU217) (CYS223) H2
(ASP225) (GLU234) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -83.2° H2
H3 121.7° 51.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4n09a_ : (PHE200) (THR216) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Trypanosoma brucei [TaxId: 999953]
d1n3bb_ : (ASP31) (ILE74) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Dephospho-CoA kinase |Escherichia coli [TaxId: 562]
d1rx0a1 : (GLY352) (GLU393) [view usage] : a.29.3.1 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |Medium chain acyl-CoA dehydrogenase-like, C-terminal domain |Isobutyryl-CoA dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1t0qb_ : (GLY108) (ILE145) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouE |Pseudomonas stutzeri [TaxId: 316]
d1zxma1 : (THR38) (ASP99) [view usage] : d.122.1.0 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qzrb2 : (SER16) (ASP78) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA topoisomerase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1bgfa_ : (MET28) (ASN49) [view usage] : a.90.1.1 |Transcription factor STAT-4 N-domain |Transcription factor STAT-4 N-domain |Transcription factor STAT-4 N-domain |Transcription factor STAT-4 N-domain |Mouse (Mus musculus) [TaxId: 10090]
d3puvf2 : (TRP261) (TRP308) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |Maltose transport system permease protein MalF |Escherichia coli [TaxId: 562]
d1gxbd2 : (PHE149) (GLY168) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Sulfolobus solfataricus [TaxId: 2287]
d1gxda1 : (ASN37) (LYS70) [view usage] : a.20.1.2 |PGBD-like |PGBD-like |MMP N-terminal domain |Gelatinase A (MMP-2) |Human (Homo sapiens) [TaxId: 9606]
d3otxb_ : (PHE200) (THR216) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1pvgb2 : (SER16) (ASP78) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA topoisomerase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1orda2 : (TYR255) (ARG283) [view usage] : c.67.1.5 |PLP-dependent transferase-like |PLP-dependent transferases |Ornithine decarboxylase major domain |Ornithine decarboxylase major domain |Lactobacillus sp., strain 30a [TaxId: 1591]
d1pvga2 : (SER16) (ASP78) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA topoisomerase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1akna_ : (CYS225) (THR261) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Bile-salt activated lipase (cholesterol esterase) |Cow (Bos taurus) [TaxId: 9913]
d1bkoa_ : (HIS92) (PRO138) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Bacillus subtilis [TaxId: 1423]
d1zvsa2 : (ALA49) (TYR85) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC, alpha-1 and alpha-2 domains |Rhesus monkey (Macaca mulatta) [TaxId: 9544]
d1ei1a2 : (LEU16) (GLY54) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA gyrase B |Escherichia coli [TaxId: 562]
d3s8ra_ : (ARG127) (GLY158) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Pseudomonas sp., glutarylamidase [TaxId: 306]
d1esxa_ : (ASP17) (ILE83) [view usage] : j.11.1.1 |VPR protein fragments |VPR protein fragments |VPR protein fragments |VPR protein fragments |Human immunodeficiency virus type 1 [TaxId: 11676]
d1s16a2 : (LEU1016) (GLY1050) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |Topoisomerase IV subunit B |Escherichia coli [TaxId: 562]
d1keha_ : (ARG127) (GLY158) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Brevundimonas diminuta [TaxId: 293]
d3mkha2 : (GLY375) (LYS416) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Podospora anserina [TaxId: 5145]
d2a9ua1 : (ARG76) (GLN139) [view usage] : a.118.23.1 |alpha-alpha superhelix |USP8 N-terminal domain-like |USP8 N-terminal domain-like |Ubiquitin carboxyl-terminal hydrolase 8, USH8 |Human (Homo sapiens) [TaxId: 9606]
d2py8a1 : (LEU60) (ASN118) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechocystis sp. PCC 6803 [TaxId: 1148]
d2a9ub_ : (ARG76) (GLN132) [view usage] : a.118.23.1 |alpha-alpha superhelix |USP8 N-terminal domain-like |USP8 N-terminal domain-like |Ubiquitin carboxyl-terminal hydrolase 8, USH8 |Human (Homo sapiens) [TaxId: 9606]
d3s8rb_ : (ARG127) (GLY158) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Pseudomonas sp., glutarylamidase [TaxId: 306]
d1hcya1 : (GLY6) (HIS49) [view usage] : a.85.1.1 |Hemocyanin, N-terminal domain |Hemocyanin, N-terminal domain |Hemocyanin, N-terminal domain |Hemocyanin, N-terminal domain |Spiny lobster (Panulirus interruptus) [TaxId: 6735]
d1tisa_ : (TRP87) (LYS131) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Bacteriophage T4 [TaxId: 10665]
d1k0mb1 : (ARG204) (GLU234) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Chloride intracellular channel 1 (clic1) |Human (Homo sapiens) [TaxId: 9606]
d1skra1 : (MET158) (SER208) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of T7 DNA polymerase |Bacteriophage T7 [TaxId: 10760]
d4prva1 : (ASP17) (GLY54) [view usage] : d.122.1.0 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1gz5a_ : (ARG405) (GLN452) [view usage] : c.87.1.6 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Trehalose-6-phosphate synthase, OtsA |Trehalose-6-phosphate synthase, OtsA |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.69, a.118, d.117, c.72, d.122, c.37, c.55, d.153, c.87, a.25, d.19, a.45, a.29, c.27, a.280, f.58, a.85, a.20, j.11,
a.90