Tableau information
Concept source: d3brpa_ amino acid (a.a.) range (SER20)(PHE63)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER20) (ALA34) H1
(ALA35) (ASN47) H2
(ASN47) (PHE63) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -42.3° H2
H3 86.2° 70.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3pvia_ : (LEU6) (ASN35) [view usage] : c.52.1.6 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease PvuII |Restriction endonuclease PvuII |Proteus vulgaris [TaxId: 585]
d1ep3a_ : (CYS280) (GLU308) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydroorotate dehydrogenase |Lactococcus lactis, isozyme B [TaxId: 1358]
d3zqza_ : (THR212) (GLY260) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4h0pb2 : (ASP258) (SER271) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Cryptococcus neoformans [TaxId: 5207]
d1m63b_ : (SER148) (MET165) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calcineurin regulatory subunit (B-chain) |Human (Homo sapiens) [TaxId: 9606]
d4mhib_ : (ARG75) (LYS131) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
d1frfl_ : (PRO96) (LYS135) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio fructosovorans [TaxId: 878]
d2o36a_ : (SER288) (MET337) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Neurolysin (endopeptidase 24.16, thimet oligopeptidase) |Human (Homo sapiens) [TaxId: 9606]
d3r7ka1 : (PRO21) (VAL54) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1u0ma1 : (GLU66) (ASP99) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Putative polyketide synthase SCO1206 |Streptomyces coelicolor [TaxId: 1902]
d2x8ya_ : (PHE213) (GLY260) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4wg2a_ : (SER72) (LEU103) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d4qxpa_ : (SER154) (LEU189) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d2wbib2 : (GLY378) (LEU424) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gtec5 : (ALA920) (SER939) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Dihydropyrimidine dehydrogenase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2zhxa_ : (PRO194) (GLY218) [view usage] : c.18.1.0 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1ni0c_ : (LEU6) (ASN35) [view usage] : c.52.1.6 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease PvuII |Restriction endonuclease PvuII |Proteus vulgaris [TaxId: 585]
d1e7pc_ : (ILE77) (ARG119) [view usage] : f.21.2.1 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Fumarate reductase respiratory complex cytochrome b subunit, FrdC |Fumarate reductase respiratory complex cytochrome b subunit, FrdC |Wolinella succinogenes [TaxId: 844]
d1ntya1 : (PRO1307) (ALA1342) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Triple functional domain protein TRIO |Human (Homo sapiens) [TaxId: 9606]
d2o3ea_ : (SER288) (LEU348) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1irma_ : (PHE79) (ILE105) [view usage] : a.132.1.1 |Heme oxygenase-like |Heme oxygenase-like |Eukaryotic type heme oxygenase |Heme oxygenase-1 (HO-1) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3sf6a2 : (GLY354) (LEU392) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4o0ra_ : (ALA512) (GLU539) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3vmka_ : (PRO339) (GLU362) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Shewanella benthica [TaxId: 43661]
d4hr3a2 : (GLY366) (ALA409) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1h7wb5 : (ALA920) (SER939) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Dihydropyrimidine dehydrogenase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d3idoa_ : (GLU100) (GLY153) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
d1wq1g_ : (PRO951) (ASN976) [view usage] : a.116.1.2 |GTPase activation domain, GAP |GTPase activation domain, GAP |p120GAP domain-like |p120GAP domain |Human (Homo sapiens) [TaxId: 9606]
d1clka_ : (LEU346) (ALA366) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces diastaticus, M1033 [TaxId: 1956]
d1tw2a2 : (ALA101) (THR128) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Carminomycin 4-O-methyltransferase |Streptomyces peucetius [TaxId: 1950]
d2pvia_ : (LEU6) (ASN35) [view usage] : c.52.1.6 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease PvuII |Restriction endonuclease PvuII |Proteus vulgaris [TaxId: 585]
d3cgwa_ : (ASN193) (LYS212) [view usage] : c.143.1.1 |CofD-like |CofD-like |CofD-like |LPPG:FO 2-phospho-L-lactate transferase CofD |Methanosarcina mazei [TaxId: 2209]
d2pg0a1 : (GLU12) (ARG39) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d1dkma_ : (SER240) (THR269) [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) |Escherichia coli [TaxId: 562]
d2z46d_ : (ASN64) (GLU107) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. [TaxId: 32049]
d2joma_ : (TYR144) (GLN185) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3c71a_ : (GLY71) (GLY95) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Bacillus subtilis [TaxId: 1423]
d1wera_ : (PRO951) (ASN976) [view usage] : a.116.1.2 |GTPase activation domain, GAP |GTPase activation domain, GAP |p120GAP domain-like |p120GAP domain |Human (Homo sapiens) [TaxId: 9606]
d1i5da_ : (ASP392) (GLY425) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase CheA |Thermotoga maritima [TaxId: 2336]
d1e4oa_ : (ASP719) (GLN761) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d4p8qa4 : (SER991) (TRP1024) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4o0ta_ : (ALA512) (LYS542) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4mrta2 : (ASP135) (SER167) [view usage] : d.150.1.1 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |4'-Phosphopantetheinyl transferase SFP |automated matches |Bacillus subtilis [TaxId: 224308]
d1yhva_ : (SER511) (THR541) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |pak1 |Human (Homo sapiens) [TaxId: 9606]
d3kczb1 : (LEU236) (LEU270) [view usage] : a.41.1.0 |Domain of poly(ADP-ribose) polymerase |Domain of poly(ADP-ribose) polymerase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a9fa1 : (THR32) (ASN66) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d3rlfg_ : (ALA11) (LEU63) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1vl6a2 : (TYR32) (ASN58) [view usage] : c.58.1.3 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Malic enzyme N-domain |Malate oxidoreductase (malic enzyme) |Thermotoga maritima [TaxId: 2336]
d2dfka1 : (PRO129) (LYS160) [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 9, Collybistin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1l0lj_ : (ARG16) (ASN61) [view usage] : f.23.14.1 |Single transmembrane helix |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Cow (Bos taurus) [TaxId: 9913]
d2euaa1 : (ASP332) (GLU361) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Menaquinone-specific isochorismate synthase MenF |Escherichia coli [TaxId: 562]
d4bv3a_ : (SER159) (PHE180) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1eyua_ : (LEU6) (ASN35) [view usage] : c.52.1.6 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease PvuII |Restriction endonuclease PvuII |Proteus vulgaris [TaxId: 585]
d2cwda_ : (ALA105) (ARG149) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2y28c_ : (ALA158) (VAL178) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |AmpD protein |Citrobacter freundii [TaxId: 546]
d1h7wd5 : (ALA920) (SER939) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Dihydropyrimidine dehydrogenase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2avwd_ : (HIS146) (HIS168) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d3scka_ : (SER218) (VAL283) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Paguma larvata
d2avwb_ : (HIS146) (HIS168) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d1r42a_ : (SER218) (LYS288) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Human (Homo sapiens) [TaxId: 9606]
d1be3c2 : (SER297) (PRO319) [view usage] : f.32.1.1 |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Mitochondrial cytochrome b subunit, C-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d1gq8a_ : (SER289) (THR312) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |Pectin methylesterase PemA |Carrot (Daucus carota) [TaxId: 4039]
d1k8ia2 : (ALA66) (PRO92) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class II MHC alpha chain, N-terminal domain |Mouse (Mus musculus), H2-DM [TaxId: 10090]
d3b5ya2 : (GLN11) (LEU52) [view usage] : f.37.1.1 |ABC transporter transmembrane region |ABC transporter transmembrane region |ABC transporter transmembrane region |Multidrug resistance ABC transporter MsbA, N-terminal domain |Salmonella typhimurium [TaxId: 90371]
d3swoa2 : (GLY351) (GLY391) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1m61a2 : (GLU136) (TYR164) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Tyrosine-protein kinase zap-70 |Human (Homo sapiens) [TaxId: 9606]
d2wbia2 : (GLY378) (THR425) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, a.104, d.58, a.118, c.66, d.92, c.77, e.18, d.122, d.144, c.18, c.47, c.55, e.6, c.95, d.3, c.87, c.60, c.31,
a.132, d.19, f.21, d.118, c.52, a.1, a.39, h.3, d.150, c.58, a.29, d.93, a.87, a.116, d.6, c.44, a.280, f.58, f.23, f.37,
c.143, d.161, d.387, a.41, f.32