Tableau information
Concept source: d1gwca1 amino acid (a.a.) range (ASP185)(ALA208)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP185) (PRO190) H1
(PRO190) (LEU202) H2
(LEU202) (ALA208) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -97.6° H2
H3 143.3° -74.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1p2xa_ : (GLU123) (GLN179) [view usage] : a.40.1.1 |CH domain-like |Calponin-homology domain, CH-domain |Calponin-homology domain, CH-domain |Ras GTPase-activating-like protein rng2 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d3kkra_ : (GLY140) (CYS169) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Bovine immunodeficiency virus [TaxId: 417296]
d3j38c_ : (THR47) (TYR67) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1tgza_ : (THR369) (LYS429) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Sentrin-specific protease 2, SENP2 |Human (Homo sapiens) [TaxId: 9606]
d1ea9c3 : (PRO249) (GLY318) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Maltogenic amylase, central domain |Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
d1m6na4 : (ASP543) (THR567) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Translocation ATPase SecA, nucleotide-binding domains |Bacillus subtilis [TaxId: 1423]
d2f48b_ : (GLY313) (LYS340) [view usage] : c.89.1.1 |Phosphofructokinase |Phosphofructokinase |Phosphofructokinase |automated matches |Borrelia burgdorferi [TaxId: 224326]
d1ltle_ : (ASP5) (ARG37) [view usage] : b.40.4.11 |OB-fold |Nucleic acid-binding proteins |DNA replication initiator (cdc21/cdc54) N-terminal domain |DNA replication initiator (cdc21/cdc54) N-terminal domain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3dl9a_ : (SER223) (GLY287) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Vitamin D 25-hydroxylase Cyp2R1 |Human (Homo sapiens) [TaxId: 9606]
d1xwna1 : (TYR28) (THR51) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 |Human (Homo sapiens) [TaxId: 9606]
d3j39n_ : (HIS139) (ARG159) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3loca2 : (PRO89) (MSE126) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Hypothetical transcriptional regulator YcdC |Escherichia coli [TaxId: 562]
d1eh5a_ : (GLU192) (ALA221) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |Palmitoyl protein thioesterase 1 |Cow (Bos taurus) [TaxId: 9913]
d1euva_ : (GLU409) (SER464) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Ulp1 protease C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4q0nd_ : (THR624) (THR667) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k19a_ : (ASN19) (CYS58) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d3wu2e_ : (PHE10) (PHE47) [view usage] : f.23.38.1 |Single transmembrane helix |Cytochrome b559 subunits |Cytochrome b559 subunits |Cytochrome b559 subunit alpha, PsbE |Thermosynechococcus vulcanus [TaxId: 32053]
d1w5ce_ : (SER11) (GLY48) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d4pj0e_ : (PHE10) (PHE47) [view usage] : f.23.38.1 |Single transmembrane helix |Cytochrome b559 subunits |Cytochrome b559 subunits |Cytochrome b559 subunit alpha, PsbE |Thermosynechococcus elongatus [TaxId: 146786]
d3zuni_ : (THR157) (ARG205) [view usage] : b.3.3.1 |Prealbumin-like |VHL |VHL |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4elya_ : (GLU452) (ILE491) [view usage] : e.11.1.1 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |Shigella flexneri [TaxId: 623]
d3msub_ : (GLU325) (LYS359) [view usage] : a.103.1.0 |Citrate synthase |Citrate synthase |automated matches |automated matches |Francisella tularensis [TaxId: 263]
d1axda1 : (THR178) (LEU209) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class phi GST |Maize (Zea mays), type I [TaxId: 4577]
d1dmwa_ : (HIS146) (PHE191) [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Phenylalanine hydroxylase, PAH |Human (Homo sapiens) [TaxId: 9606]
d1j58a_ : (ILE25) (THR44) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d3ij6c_ : (ASN26) (ASP41) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Lactobacillus acidophilus [TaxId: 1579]
d2iazc_ : (SER64) (SER108) [view usage] : a.281.1.2 |YheA-like |YheA/YmcA-like |YheA-like |Hypothetical protein SP1372 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2f0ya_ : (GLY288) (SER307) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ikha2 : (GLY204) (GLY227) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Pseudomonas protegens [TaxId: 220664]
d1l3ja_ : (ILE25) (THR44) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d2dt7b1 : (GLN187) (THR216) [view usage] : a.217.1.1 |Surp module (SWAP domain) |Surp module (SWAP domain) |Surp module (SWAP domain) |Splicing factor 3 subunit 1, SF3A1 |Human (Homo sapiens) [TaxId: 9606]
d2beda_ : (GLY288) (SER307) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2xuaa_ : (THR160) (ALA196) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
d1kzha_ : (LEU314) (LYS340) [view usage] : c.89.1.1 |Phosphofructokinase |Phosphofructokinase |Phosphofructokinase |Pyrophosphate-dependent phosphofructokinase |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d4il6e_ : (PHE10) (PHE47) [view usage] : f.23.38.1 |Single transmembrane helix |Cytochrome b559 subunits |Cytochrome b559 subunits |Cytochrome b559 subunit alpha, PsbE |Thermosynechococcus vulcanus [TaxId: 32053]
d2io1c_ : (THR369) (LYS429) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Sentrin-specific protease 2, SENP2 |Human (Homo sapiens) [TaxId: 9606]
d2io2a_ : (GLU370) (LYS429) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Sentrin-specific protease 2, SENP2 |Human (Homo sapiens) [TaxId: 9606]
d1keha_ : (GLY84) (SER123) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Brevundimonas diminuta [TaxId: 293]
d1tdwa_ : (HIS146) (PHE191) [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Phenylalanine hydroxylase, PAH |Human (Homo sapiens) [TaxId: 9606]
d4jyka2 : (PRO90) (MET127) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Hypothetical transcriptional regulator YcdC |Escherichia coli [TaxId: 562]
d3ukva_ : (LYS714) (LEU738) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d1mlvc1 : (PRO352) (THR379) [view usage] : a.166.1.1 |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |RuBisCo LSMT C-terminal, substrate-binding domain |Pea (Pisum sativum) [TaxId: 3888]
d1gwcc1 : (ASP185) (ALA208) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class tau GST |Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]
d1zykc2 : (PHE149) (GLY168) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Sulfolobus solfataricus [TaxId: 2287]
d1ww9a2 : (TRP171) (ASP197) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Terminal oxygenase component of carbazole CarAa |Janthinobacterium sp. J3 [TaxId: 213804]
d1zxya2 : (PHE149) (GLY168) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Sulfolobus solfataricus [TaxId: 2287]
d3s8rb_ : (VAL85) (SER123) [view usage] : d.153.1.2 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin acylase, catalytic domain |Cephalosporin acylase |Pseudomonas sp., glutarylamidase [TaxId: 306]
d1tlqa_ : (LEU46) (THR91) [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |Hypothetical protein YpjQ |Bacillus subtilis [TaxId: 1423]
d3mb4b_ : (THR624) (THR667) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gwca1 : (ASP185) (ALA208) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class tau GST |Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]
d2b1xa2 : (LYS204) (GLY228) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Rhodococcus sp. ncimb12038 [TaxId: 92694]
d3uvya_ : (GLN59) (LYS102) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3hbja_ : (GLU192) (ALA216) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d1grnb_ : (SER268) (THR300) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |Cdc42GAP |Human (Homo sapiens) [TaxId: 9606]
d1asha_ : (THR51) (ARG82) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Ascaris hemoglobin, domain 1 |Pig roundworm (Ascaris suum) [TaxId: 6253]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.69, a.104, i.1, a.118, d.129, b.40, c.37, d.178, c.55, a.103, c.89, d.153, d.3, c.87, i.5, e.11, b.62, a.1,
a.45, b.3, a.29, a.40, a.116, c.27, f.23, a.281, a.121, a.195, a.217, a.166