Tableau information
Concept source: d1oe4a_ amino acid (a.a.) range (ASN255)(THR280)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN255) (GLY261) H1
(GLY261) (GLY274) H2
(VAL275) (THR280) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 98.5° H2
H3 -54.0° -105.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1e1cb1 : (ASN391) (GLY427) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase beta subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d1nkza_ : (GLN3) (GLY47) [view usage] : f.3.1.1 |Light-harvesting complex subunits |Light-harvesting complex subunits |Light-harvesting complex subunits |Light-harvesting complex subunits |Rhodoblastus acidophilus [TaxId: 1074]
d2reqa1 : (GLY395) (GLY431) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d1diya1 : (LYS546) (THR572) [view usage] : a.93.1.2 |Heme-dependent peroxidases |Heme-dependent peroxidases |Myeloperoxidase-like |Prostaglandin H2 synthase |Sheep (Ovis aries) [TaxId: 9940]
d2cg3a1 : (SER531) (GLU557) [view usage] : d.106.1.3 |SCP-like |SCP-like |Alkylsulfatase C-terminal domain-like |Alkylsulfatase SdsA1 |Pseudomonas aeruginosa [TaxId: 287]
d1lzwb_ : (THR172) (HIS218) [view usage] : a.174.1.1 |Double Clp-N motif |Double Clp-N motif |Double Clp-N motif |N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone |Escherichia coli [TaxId: 562]
d1mbba2 : (ALA265) (SER342) [view usage] : d.146.1.1 |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Escherichia coli [TaxId: 562]
d1eh5a_ : (GLU81) (GLY108) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |Palmitoyl protein thioesterase 1 |Cow (Bos taurus) [TaxId: 9913]
d1jb0b_ : (LEU649) (ARG698) [view usage] : f.29.1.1 |Photosystem I subunits PsaA/PsaB |Photosystem I subunits PsaA/PsaB |Photosystem I subunits PsaA/PsaB |Apoprotein a2, PsaB |Synechococcus elongatus [TaxId: 32046]
d1yywa1 : (LEU4) (GLU34) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d2q62c_ : (SER191) (ALA229) [view usage] : c.23.5.4 |Flavodoxin-like |Flavoproteins |NADPH-dependent FMN reductase |automated matches |Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]
d1ztda1 : (LYS5) (LEU53) [view usage] : a.149.1.2 |RNase III domain-like |RNase III domain-like |PF0609-like |Hypothetical protein PF0609 |Pyrococcus furiosus [TaxId: 2261]
d1c50a_ : (ARG714) (GLY748) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1ezvc3 : (MET221) (PRO259) [view usage] : f.21.1.2 |Heme-binding four-helical bundle |Transmembrane di-heme cytochromes |Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Mitochondrial cytochrome b subunit, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1oe5a_ : (ASN255) (THR280) [view usage] : c.18.1.3 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2bnza_ : (ARG33) (LEU71) [view usage] : a.43.1.4 |Ribbon-helix-helix |Ribbon-helix-helix |Omega transcriptional repressor |automated matches |Streptococcus pyogenes [TaxId: 1314]
d3e4dd_ : (SER182) (GLY209) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d3hada1 : (PRO246) (ASN288) [view usage] : a.100.1.3 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |HCDH C-domain-like |Short chain L-3-hydroxyacyl CoA dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1x9fa_ : (SER8) (PHE53) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Extracellular dodecameric hemoglobin (erythrocruorin), subunit IV (globin A) |Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d1v33a_ : (SER164) (ARG193) [view usage] : d.264.1.1 |Prim-pol domain |Prim-pol domain |PriA-like |DNA primase |Pyrococcus horikoshii [TaxId: 53953]
d1r54a_ : (PRO357) (ALA408) [view usage] : d.92.1.9 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Reprolysin-like |ADAM33 |Human (Homo sapiens) [TaxId: 9606]
d1f99a_ : (ASN21) (MET69) [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |Phycocyanin alpha subunit |Red alga (Polysiphonia urceolata) [TaxId: 65404]
d1t11a1 : (GLY257) (GLN320) [view usage] : a.223.1.1 |Triger factor/SurA peptide-binding domain-like |Triger factor/SurA peptide-binding domain-like |TF C-terminus |Trigger factor, C-terminal domain |Vibrio cholerae [TaxId: 666]
d1cx2a1 : (LYS546) (VAL572) [view usage] : a.93.1.2 |Heme-dependent peroxidases |Heme-dependent peroxidases |Myeloperoxidase-like |Prostaglandin H2 synthase |Mouse (Mus musculus) [TaxId: 10090]
d1j2ta_ : (PRO160) (ASP196) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d3e4da_ : (ALA179) (GLY209) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1hi8a_ : (SER582) (TYR630) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d3wfwa_ : (THR2) (PHE42) [view usage] : a.1.1.0 |Globin-like |Globin-like |automated matches |automated matches |Methylacidiphilum infernorum [TaxId: 481448]
d1q46a1 : (ALA130) (LYS174) [view usage] : a.60.14.1 |SAM domain-like |eIF2alpha middle domain-like |eIF2alpha middle domain-like |Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3a28a_ : (THR189) (GLY221) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brevibacterium saccharolyticum [TaxId: 1718]
d2bnzc_ : (ARG33) (LEU71) [view usage] : a.43.1.4 |Ribbon-helix-helix |Ribbon-helix-helix |Omega transcriptional repressor |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1e4oa_ : (THR679) (GLY713) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d2bmob1 : (ASN4) (GLN48) [view usage] : d.17.4.4 |Cystatin-like |NTF2-like |Ring hydroxylating beta subunit |Nitrobenzene dioxygenase beta subunit, NBDO-beta |Comamonas sp. JS765 [TaxId: 58226]
d1r55a_ : (PRO357) (ALA408) [view usage] : d.92.1.9 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Reprolysin-like |ADAM33 |Human (Homo sapiens) [TaxId: 9606]
d4dglb_ : (GLU61) (GLY104) [view usage] : g.41.4.1 |Rubredoxin-like |Casein kinase II beta subunit |Casein kinase II beta subunit |Casein kinase II beta subunit |Human (Homo sapiens) [TaxId: 9606]
d1n9za_ : (SER277) (CYS315) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d2fzva1 : (PRO193) (GLY230) [view usage] : c.23.5.4 |Flavodoxin-like |Flavoproteins |NADPH-dependent FMN reductase |Putative arsenical resistance protein |Shigella flexneri [TaxId: 623]
d1yaca_ : (TRP165) (THR205) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |YcaC |Escherichia coli [TaxId: 562]
d2jlga_ : (SER582) (TYR630) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d1siwb_ : (THR427) (PHE456) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Respiratory nitrate reductase 1 beta chain |Escherichia coli [TaxId: 562]
d2bnwb_ : (ALA34) (LEU71) [view usage] : a.43.1.4 |Ribbon-helix-helix |Ribbon-helix-helix |Omega transcriptional repressor |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1oe4a_ : (ASN255) (THR280) [view usage] : c.18.1.3 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1pdub_ : (ASN495) (MET544) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear hormone receptor HR38 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1ulya_ : (LYS149) (LYS191) [view usage] : a.4.5.58 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein PH1932 |Hypothetical protein PH1932 |Pyrococcus horikoshii [TaxId: 53953]
d1uxya2 : (ALA265) (SER342) [view usage] : d.146.1.1 |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.69, c.2, d.58, d.92, a.93, c.23, c.18, c.87, c.62, a.123, d.17, f.21, c.33, d.106, a.1, a.100, a.4, c.125,
a.149, a.60, d.264, g.41, f.29, a.174, a.43, d.146, f.3, a.223