Tableau information
Concept source: d1mqqa1 amino acid (a.a.) range (GLY562)(HIS590)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY562) (PHE568) H1
(PRO569) (TYR575) H2
(LEU586) (HIS590) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 152.0° H2
H3 -124.6° -80.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3o2ma_ : (HIS286) (TYR325) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1q6ya_ : (TRP279) (THR299) [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Hypothetical protein YfdW |Escherichia coli [TaxId: 562]
d1ud3a2 : (VAL286) (HIS316) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus sp., ksm-k38 [TaxId: 1409]
d3ecma_ : (LYS672) (VAL727) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zq5a3 : (TYR327) (LEU362) [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d2wn6a1 : (THR62) (LYS91) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium difficile [TaxId: 1496]
d2pk0c_ : (SER137) (ILE161) [view usage] : d.219.1.0 |PP2C-like |PP2C-like |automated matches |automated matches |Streptococcus agalactiae [TaxId: 205921]
d2r6ia1 : (ARG69) (ILE101) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |Uncharacterized protein Atu1473 |Agrobacterium tumefaciens [TaxId: 358]
d1rc7a1 : (GLU102) (GLY146) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |RNase III endonuclease catalytic domain |Aquifex aeolicus [TaxId: 63363]
d2jo0a_ : (SER5) (GLU31) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |HIV capsid protein, dimerisation domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d2ex0b_ : (SER143) (ARG186) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d2iv7a1 : (TYR103) (PHE132) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Lipopolysaccharide core biosynthesis protein RfaG |Escherichia coli [TaxId: 562]
d1xd3c_ : (SER117) (ALA152) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase UCH-l3 |Human (Homo sapiens) [TaxId: 9606]
d1is2a1 : (MET394) (THR419) [view usage] : a.29.3.2 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |acyl-CoA oxidase C-terminal domains |Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2lena_ : (VAL113) (GLY150) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase isozyme l1 |Human (Homo sapiens) [TaxId: 9606]
d2o35a1 : (SER5) (GLY58) [view usage] : a.293.1.1 |SMc04008-like |SMc04008-like |SMc04008-like |Hypothetical protein SMc04008 |Rhizobium meliloti [TaxId: 382]
d3ubta_ : (PRO70) (GLN100) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |automated matches |Haemophilus aegyptius [TaxId: 197575]
d3gysc_ : (GLN60) (ARG92) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Cat (Felis catus) [TaxId: 9685]
d1o7xb_ : (PRO186) (GLY220) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d1zwsa_ : (SER245) (PRO277) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1sura_ : (ASP4) (LEU30) [view usage] : c.26.2.2 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |PAPS reductase-like |Phosphoadenylyl sulphate (PAPS) reductase |Escherichia coli [TaxId: 562]
d1wytb1 : (LEU82) (THR120) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase subunit 2 (P-protein) |Thermus thermophilus [TaxId: 274]
d2pfma_ : (GLN378) (LEU405) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d4ovqa_ : (VAL97) (GLY135) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Roseobacter denitrificans [TaxId: 375451]
d3u87a_ : (SER294) (GLU330) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d2r73b_ : (GLU138) (ASP164) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Trichosurus vulpecula [TaxId: 9337]
d1w9ca_ : (ILE713) (ARG753) [view usage] : a.118.1.19 |alpha-alpha superhelix |ARM repeat |Exportin HEAT-like repeat |Exportin-1 (Xpo1, Crm1) |Human (Homo sapiens) [TaxId: 9606]
d1acbi_ : (PHE10) (TYR32) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Eglin C |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d1txoa_ : (THR137) (LEU161) [view usage] : d.219.1.1 |PP2C-like |PP2C-like |PP2C-like |putative serine/threonine phosphatase pstp/ppp |Mycobacterium tuberculosis [TaxId: 1773]
d1o7xc_ : (ALA187) (GLY220) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d2jfra_ : (SER130) (LEU154) [view usage] : d.219.1.0 |PP2C-like |PP2C-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4oj2x_ : (ALA8) (GLY64) [view usage] : f.19.1.0 |Aquaporin-like |Aquaporin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ymwa_ : (THR3) (ARG39) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Ribonuclease A (also ribonuclease B, S) |Cow (Bos taurus) [TaxId: 9913]
d1na7a_ : (SER294) (VAL327) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d3tefa_ : (ILE281) (GLY299) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d11asa_ : (ASP257) (GLY285) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Asparagine synthetase |Escherichia coli [TaxId: 562]
d3s44a_ : (SER143) (ARG186) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |automated matches |Pasteurella multocida [TaxId: 747]
d1tbqr2 : (ASP55) (PRO91) [view usage] : g.68.1.1 |Kazal-type serine protease inhibitors |Kazal-type serine protease inhibitors |Ovomucoid domain III-like |Blood-sucking insect-derived tryptase inhibitor |Rhodnius prolixus, rhodniin [TaxId: 13249]
d3npca_ : (SER284) (TYR325) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a5pa_ : (THR3) (ARG39) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Ribonuclease A (also ribonuclease B, S) |Cow (Bos taurus) [TaxId: 9913]
d4pf6a_ : (PHE97) (GLY136) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Roseobacter denitrificans [TaxId: 375451]
d2jeka1 : (LYS11) (PRO43) [view usage] : a.255.1.1 |Rv1873-like |Rv1873-like |Rv1873-like |Hypothetical protein Rv1873 (MT1922) |Mycobacterium tuberculosis [TaxId: 1773]
d3npcb_ : (SER284) (TYR325) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3mkha1 : (SER8) (ILE64) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Podospora anserina [TaxId: 5145]
d3buza1 : (SER53) (LYS82) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Enzymatic component (Ia) of iota-toxin |Clostridium perfringens [TaxId: 1502]
d3irua_ : (THR47) (GLY81) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d3ifwa_ : (SER112) (GLY150) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ex0a1 : (SER143) (ARG186) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d2jfsa_ : (SER130) (LEU154) [view usage] : d.219.1.0 |PP2C-like |PP2C-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4pgpb_ : (VAL107) (VAL142) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
d1o7xd_ : (ALA187) (GLY220) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d3di9a_ : (THR3) (ARG39) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Ribonuclease A (also ribonuclease B, S) |Cow (Bos taurus) [TaxId: 9913]
d6csca_ : (VAL243) (ALA277) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Chicken (Gallus gallus) [TaxId: 9031]
d4o7ma_ : (THR106) (LEU136) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Shewanella loihica [TaxId: 323850]
d1zrla1 : (ALA250) (TYR280) [view usage] : a.264.1.1 |Duffy binding domain-like |Duffy binding domain-like |Duffy binding domain |Erythrocyte binding antigen region II |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2yyea2 : (THR174) (ALA200) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Selenide, water dikinase SelD |Aquifex aeolicus [TaxId: 63363]
d2etla1 : (SER112) (GLY150) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase isozyme l1 |Human (Homo sapiens) [TaxId: 9606]
d2pk0d_ : (SER137) (ILE161) [view usage] : d.219.1.0 |PP2C-like |PP2C-like |automated matches |automated matches |Streptococcus agalactiae [TaxId: 205921]
d1txob_ : (THR137) (LEU161) [view usage] : d.219.1.1 |PP2C-like |PP2C-like |PP2C-like |putative serine/threonine phosphatase pstp/ppp |Mycobacterium tuberculosis [TaxId: 1773]
d4b1td_ : (PHE10) (TYR32) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |automated matches |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.123, c.67, c.94, a.118, c.108, c.26, c.92, c.66, a.127, a.211, d.144, d.104, a.103, e.6, d.166, b.60, d.3, c.87, d.110,
a.1, d.5, d.139, d.219, a.29, f.19, a.149, a.28, a.255, a.264, g.68, d.381, a.293, d.40