Tableau information
Concept source: d1u2ka_ amino acid (a.a.) range (SER463)(TRP500)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER463) (ALA475) H1
(ALA490) (MET495) H2
(MET495) (TRP500) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 85.2° H2
H3 137.3° -88.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3cyzb_ : (LEU12) (SER57) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Pheromone-binding protein asp1 |Honeybee (Apis mellifera) [TaxId: 7460]
d1umxm_ : (ASN199) (THR255) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d2vo9b_ : (THR4) (GLY40) [view usage] : d.65.1.5 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |VanY-like |automated matches |Bacteriophage a500 [TaxId: 40522]
d4f18a_ : (SER1208) (ALA1226) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
d2bvja_ : (ASP16) (GLY39) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d4naxa2 : (ALA198) (GLU219) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Pseudomonas putida [TaxId: 351746]
d1uxda_ : (LEU3) (ASN46) [view usage] : a.35.1.5 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |GalR/LacI-like bacterial regulator |Fructose repressor (FruR), N-terminal domain |Escherichia coli [TaxId: 562]
d4dg5a_ : (ASN117) (SER141) [view usage] : c.86.1.0 |Phosphoglycerate kinase |Phosphoglycerate kinase |automated matches |automated matches |Staphylococcus aureus [TaxId: 282458]
d2ejca_ : (LYS111) (ILE138) [view usage] : c.26.1.4 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Thermotoga maritima [TaxId: 2336]
d2c7xa_ : (ASP16) (GLY39) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d2pe5a1 : (THR5) (ASN46) [view usage] : a.35.1.5 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |GalR/LacI-like bacterial regulator |Lac repressor (LacR), N-terminal domain |Escherichia coli [TaxId: 562]
d1uuqa_ : (THR142) (ARG192) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Exomannosidase |Cellvibrio mixtus [TaxId: 39650]
d4wsha_ : (LEU33) (ARG66) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1pjaa_ : (THR146) (PHE173) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |Palmitoyl protein thioesterase 2 |Human (Homo sapiens) [TaxId: 9606]
d4m1va_ : (SER212) (ALA230) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Unidentified prokaryotic [TaxId: 2725]
d4lypa_ : (PHE123) (ARG179) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d1z6ra3 : (SER270) (PHE333) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Mlc protein |Escherichia coli [TaxId: 562]
d3zk5a_ : (ASP16) (GLY39) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d1lcca_ : (THR5) (LEU45) [view usage] : a.35.1.5 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |GalR/LacI-like bacterial regulator |Lac repressor (LacR), N-terminal domain |Escherichia coli [TaxId: 562]
d1zvva1 : (THR4) (LEU44) [view usage] : a.35.1.5 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |GalR/LacI-like bacterial regulator |Glucose-resistance amylase regulator CcpA, N-terminal domain |Bacillus megaterium [TaxId: 1404]
d2lmda_ : (ARG117) (ASP155) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g0da4 : (ASP211) (GLY287) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Red sea bream (Chrysophrys major) [TaxId: 143350]
d1ffuc2 : (PRO92) (GLU133) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d1owla1 : (PRO427) (ARG448) [view usage] : a.99.1.1 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |C-terminal domain of DNA photolyase |Synechococcus elongatus [TaxId: 32046]
d2wqpa1 : (VAL59) (CYS86) [view usage] : c.1.10.6 |TIM beta/alpha-barrel |Aldolase |NeuB-like |automated matches |Neisseria meningitidis [TaxId: 491]
d2afkg_ : (MET58) (LEU76) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d1cpoa1 : (ALA64) (HIS105) [view usage] : a.39.3.1 |EF Hand-like |Cloroperoxidase |Cloroperoxidase |Cloroperoxidase |Fungus (Caldariomyces fumago) [TaxId: 5474]
d3zpia_ : (ASP16) (GLY39) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d1reqd1 : (SER402) (ASN455) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase beta subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d2ofkb_ : (ARG53) (LEU80) [view usage] : a.96.1.4 |DNA-glycosylase |DNA-glycosylase |3-Methyladenine DNA glycosylase I (Tag) |3-Methyladenine DNA glycosylase I (Tag) |Salmonella typhi [TaxId: 601]
d3ujpa_ : (VAL132) (ASP177) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d1prua_ : (THR3) (HIS44) [view usage] : a.35.1.5 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |GalR/LacI-like bacterial regulator |Purine repressor (PurR), N-terminal domain |Escherichia coli [TaxId: 562]
d1ab3a_ : (THR3) (HIS45) [view usage] : a.16.1.2 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |Ribosomal protein S15 |Ribosomal protein S15 |Thermus thermophilus [TaxId: 274]
d1f6nm_ : (PHE201) (THR255) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d1de0a_ : (MET58) (LEU76) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d3dtsm_ : (ASN199) (THR255) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d1c7ja_ : (THR222) (GLU266) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Thermophilic para-nitrobenzyl esterase (PNB esterase) |Bacillus subtilis [TaxId: 1423]
d2vzma_ : (ASP16) (GLY39) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d2i6ha1 : (ALA7) (ARG38) [view usage] : a.118.8.5 |alpha-alpha superhelix |TPR-like |Atu0120-like |Hypothetical protein Atu0120 |Agrobacterium tumefaciens [TaxId: 358]
d2gk3e_ : (SER225) (ILE250) [view usage] : c.23.16.9 |Flavodoxin-like |Class I glutamine amidotransferase-like |STM3548-like |Putative cytoplasmic protein STM3548 |Salmonella typhimurium [TaxId: 90371]
d3wh9a_ : (MET118) (SER155) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Aspergillus niger [TaxId: 5061]
d1uxca_ : (LEU3) (ASN46) [view usage] : a.35.1.5 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |GalR/LacI-like bacterial regulator |Fructose repressor (FruR), N-terminal domain |Escherichia coli [TaxId: 562]
d1zpqc_ : (LYS6) (GLY34) [view usage] : a.35.1.9 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Bacteriophage CII protein |Regulatory protein cII |Bacteriophage lambda [TaxId: 10710]
d3zgoc_ : (THR101) (LEU138) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2q9ta_ : (SER208) (ALA226) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
d1lpva_ : (ALA11) (ARG47) [view usage] : g.62.1.1 |Cysteine-rich DNA binding domain, (DM domain) |Cysteine-rich DNA binding domain, (DM domain) |Cysteine-rich DNA binding domain, (DM domain) |DM domain of Doublesex (dsx) |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4mlpa2 : (PRO452) (LYS477) [view usage] : a.99.1.1 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, a.104, a.118, c.26, c.92, a.93, c.23, c.37, c.55, c.86, d.3, f.26, a.96, c.31, a.4, d.145, a.39, a.45,
d.65, a.99, a.35, a.16, g.62