Tableau information
Concept source: d1iysa_ amino acid (a.a.) range (GLU201)(LEU225)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU201) (ASN214) H1
(ASN214) (SER220) H2
(SER220) (LEU225) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -53.7° H2
H3 -81.0° -56.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4m3ka_ : (ILE208) (VAL225) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Bacillus licheniformis [TaxId: 1402]
d2gvsa_ : (LEU13) (SER54) [view usage] : a.118.21.0 |alpha-alpha superhelix |Chemosensory protein Csp2 |automated matches |automated matches |Desert locust (Schistocerca gregaria) [TaxId: 7010]
d2f43a1 : (ILE438) (GLU457) [view usage] : a.69.1.0 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3krfd_ : (GLU200) (ILE252) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Mentha x [TaxId: 34256]
d1occe_ : (HIS78) (GLY105) [view usage] : a.118.11.1 |alpha-alpha superhelix |Cytochrome c oxidase subunit E |Cytochrome c oxidase subunit E |Cytochrome c oxidase subunit E |Cow (Bos taurus) [TaxId: 9913]
d3qmma_ : (GLY155) (ASN174) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |automated matches |Bacillus subtilis [TaxId: 1423]
d1hv2a_ : (ASP50) (SER98) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |Elongin C |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jgia2 : (GLU518) (GLN546) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Amylosucrase |Neisseria polysaccharea [TaxId: 489]
d4awna_ : (GLY172) (SER189) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ii6a_ : (ASP156) (ALA192) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d4p8ba_ : (ASP78) (SER102) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Cupriavidus necator [TaxId: 381666]
d1w07a2 : (THR578) (ALA606) [view usage] : a.29.3.2 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |acyl-CoA oxidase C-terminal domains |Acyl-coenzyme A oxidase 1, domains 3 and 4 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3qfma_ : (ASN66) (SER101) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 171101]
d2r91a_ : (ALA262) (LEU304) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Thermoproteus tenax [TaxId: 2271]
d3dblf_ : (PRO214) (GLU240) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1s7aa_ : (MET10) (LEU42) [view usage] : a.4.5.46 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |La domain |Lupus La autoantigen N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1kgga_ : (LEU208) (VAL225) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Staphylococcus aureus [TaxId: 1280]
d4bnda_ : (GLY211) (MET226) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Lactococcus lactis [TaxId: 416870]
d2p0wa_ : (SER279) (SER301) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Histone acetyltransferase HAT1 |Human (Homo sapiens) [TaxId: 9606]
d3p3xa_ : (GLY95) (LEU132) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces thioluteus [TaxId: 66431]
d2mh0b_ : (PRO1780) (LYS1812) [view usage] : g.53.1.1 |TAZ domain |TAZ domain |TAZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3czja3 : (ASN424) (VAL440) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1iapa_ : (PRO89) (ARG111) [view usage] : a.91.1.1 |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |p115RhoGEF |Human (Homo sapiens) [TaxId: 9606]
d2m03a_ : (MET3) (LEU76) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4pmva_ : (HIS283) (ASP300) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d1ibrd_ : (TYR248) (SER270) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d2cqka1 : (SER45) (MET76) [view usage] : a.4.5.46 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |La domain |La-related protein 4 LARP4 |Human (Homo sapiens) [TaxId: 9606]
d4pmua_ : (HIS283) (ASP300) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d4pkba_ : (PRO224) (ARG246) [view usage] : c.19.1.3 |FabD/lysophospholipase-like |FabD/lysophospholipase-like |Patatin |Patatin |Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
d3h0na_ : (ASN2) (ALA21) [view usage] : d.380.1.1 |Jann2411-like |Jann2411-like |Jann2411-like |Uncharacterized protein Jann2411 |Jannaschia sp. CCS1 [TaxId: 290400]
d1ux4a_ : (SER1440) (LYS1467) [view usage] : a.207.1.1 |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Bni1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1qs2a1 : (ASP103) (THR136) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Vegetative insecticidal protein 2 (VIP2) |Bacillus cereus [TaxId: 1396]
d1iu4a_ : (ASP165) (THR177) [view usage] : d.3.1.8 |Cysteine proteinases |Cysteine proteinases |Microbial transglutaminase |Microbial transglutaminase |Streptoverticillium mobaraense [TaxId: 35621]
d2ps4a_ : (LEU206) (GLU252) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d1ly8a_ : (ILE242) (MET261) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Fungal peroxidase (ligninase) |Inky cap (Coprinus cinereus) [TaxId: 5346]
d1tuwa_ : (MET60) (LEU83) [view usage] : d.58.4.8 |Ferredoxin-like |Dimeric alpha+beta barrel |Polyketide synthesis cyclase |Tetracenomycin polyketide synthesis protein TcmI |Streptomyces glaucescens [TaxId: 1907]
d1ly9a_ : (MET242) (MET261) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Fungal peroxidase (ligninase) |Inky cap (Coprinus cinereus) [TaxId: 5346]
d2w7qa_ : (LEU101) (PHE124) [view usage] : b.125.1.0 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2q9zb_ : (LEU206) (VAL249) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d1ikta_ : (SER8) (LYS29) [view usage] : d.106.1.1 |SCP-like |SCP-like |Sterol carrier protein, SCP |SCP2-like domain of MFE-2 |Human (Homo sapiens) [TaxId: 9606]
d3c07b2 : (LEU92) (GLN116) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Putative transcriptional regulator SCO4850 |Streptomyces coelicolor [TaxId: 1902]
d1goja_ : (THR251) (LEU291) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |Kinesin |Fungus (Neurospora crassa) [TaxId: 5141]
d2zsja_ : (ALA221) (GLY262) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2aeka_ : (LEU206) (GLU252) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d1siqa2 : (THR17) (ASN45) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Glutaryl-CoA dehydrogenase GCDH |Human (Homo sapiens) [TaxId: 9606]
d4itya_ : (ASN152) (PRO177) [view usage] : c.42.1.0 |Arginase/deacetylase |Arginase/deacetylase |automated matches |automated matches |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d2muca1 : (ASP204) (ARG241) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Muconate-lactonizing enzyme |Pseudomonas putida [TaxId: 303]
d1k8ke_ : (ILE41) (CYS85) [view usage] : a.148.1.1 |Arp2/3 complex 21 kDa subunit ARPC3 |Arp2/3 complex 21 kDa subunit ARPC3 |Arp2/3 complex 21 kDa subunit ARPC3 |Arp2/3 complex 21 kDa subunit ARPC3 |Cow (Bos taurus) [TaxId: 9913]
d3flua_ : (ALA251) (GLY289) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Neisseria meningitidis [TaxId: 491]
d1hbmb1 : (SER412) (GLU427) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1kx8a_ : (ASN12) (GLY54) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d4qbma_ : (HIS1796) (PRO1821) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4jgxb_ : (PHE7) (LYS35) [view usage] : d.106.1.0 |SCP-like |SCP-like |automated matches |automated matches |Yarrowia lipolytica [TaxId: 284591]
d3axja_ : (GLN84) (GLY112) [view usage] : a.118.16.0 |alpha-alpha superhelix |Translin |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1ne7b_ : (LYS248) (LEU269) [view usage] : c.124.1.1 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |NagB-like |Glucosamine 6-phosphate deaminase/isomerase NagB |Human (Homo sapiens) [TaxId: 9606]
d4pmuf_ : (HIS283) (ASP300) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d1l8ca_ : (ASP2) (CYS77) [view usage] : g.53.1.1 |TAZ domain |TAZ domain |TAZ domain |CREB-binding transcriptional adaptor protein CBP (p300) |Mouse (Mus musculus) [TaxId: 10090]
d4fdma_ : (ASP357) (ALA384) [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |automated matches |Bacillus sp. [TaxId: 307644]
d1mbla_ : (ILE208) (VAL225) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Bacillus licheniformis [TaxId: 1402]
d3l2fp1 : (ASP90) (ILE108) [view usage] : a.83.1.0 |Guanido kinase N-terminal domain |Guanido kinase N-terminal domain |automated matches |automated matches |Namalycastis sp. [TaxId: 243920]
d2z67a1 : (LYS12) (ASP59) [view usage] : c.67.1.9 |PLP-dependent transferase-like |PLP-dependent transferases |SepSecS-like |Selenocysteinyl-tRNA synthase (SepSecS) |Methanococcus maripaludis [TaxId: 39152]
d2rccb_ : (PRO277) (TYR315) [view usage] : a.25.1.0 |Ferritin-like |Ferritin-like |automated matches |automated matches |Bacillus halodurans [TaxId: 272558]
d3gfvb_ : (THR246) (GLY264) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d3gzna_ : (PRO289) (LYS324) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d2od1a_ : (SER685) (THR702) [view usage] : g.85.1.1 |HIT/MYND zinc finger-like |HIT/MYND zinc finger-like |MYND zinc finger |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ffvc2 : (VAL77) (PRO92) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d2y69e_ : (HIS78) (GLY105) [view usage] : a.118.11.1 |alpha-alpha superhelix |Cytochrome c oxidase subunit E |Cytochrome c oxidase subunit E |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2nr5c_ : (ASN48) (ALA64) [view usage] : a.25.6.1 |Ferritin-like |SO2669-like |SO2669-like |automated matches |Shewanella oneidensis [TaxId: 211586]
d1xyxa_ : (THR199) (ARG230) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Mouse (Mus musculus) [TaxId: 10090]
d2i8na_ : (GLU1) (TYR26) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ke8a_ : (VAL227) (HIS248) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus sp. [TaxId: 129908]
d3e8za_ : (LEU140) (VAL165) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1rbsa_ : (GLN72) (LEU111) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |RNase H (RNase HI) |Escherichia coli [TaxId: 562]
d2r94b_ : (ALA262) (LEU304) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Thermoproteus tenax [TaxId: 2271]
d4qc2a_ : (THR220) (GLY236) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Escherichia coli [TaxId: 536056]
d2asya1 : (GLU90) (ALA101) [view usage] : d.58.4.12 |Ferredoxin-like |Dimeric alpha+beta barrel |Hypothetical protein YdhR |Hypothetical protein YdhR |Escherichia coli [TaxId: 562]
d3iapa3 : (ASN424) (VAL440) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d1v54e_ : (HIS78) (GLY105) [view usage] : a.118.11.1 |alpha-alpha superhelix |Cytochrome c oxidase subunit E |Cytochrome c oxidase subunit E |Cytochrome c oxidase subunit E |Cow (Bos taurus) [TaxId: 9913]
d2bisa1 : (VAL265) (MET284) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Pyrococcus abyssi [TaxId: 29292]
d1ql6a_ : (THR277) (VAL291) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |gamma-subunit of glycogen phosphorylase kinase (Phk) |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2fwea_ : (CYS461) (ALA482) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, c.67, c.69, c.94, a.104, d.159, d.58, a.118, c.108, c.79, a.128, c.92, c.124, a.93, c.42, d.144, c.37, c.47, c.55,
e.6, d.166, d.151, d.3, c.87, d.108, b.125, a.25, c.19, d.106, c.111, a.4, d.145, a.29, f.1, a.91, a.83, d.42, d.6, a.69,
a.121, a.89, d.380, g.53, a.207, a.148, g.85