Tableau information
Concept source: d1qx7a_ amino acid (a.a.) range (THR28)(THR79)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR28) (GLY40) H1
(THR44) (ASP56) H2
(ASP64) (THR79) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 121.7° H2
H3 -41.5° 133.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2hcba2 : (ASN243) (LEU288) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Chromosomal replication initiation factor DnaA |Aquifex aeolicus [TaxId: 63363]
d1ou0b_ : (ARG16) (LEU52) [view usage] : c.23.17.1 |Flavodoxin-like |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8x methylmutase related protein |Thermoplasma acidophilum [TaxId: 2303]
d2fj3a_ : (ASN142) (ALA228) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3d3ca_ : (ALA4) (ASN58) [view usage] : a.79.1.1 |NusB-like |NusB-like |Antitermination factor NusB |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1wufa2 : (LEU1061) (VAL1104) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |N-acylamino acid racemase |Listeria innocua [TaxId: 1642]
d3cnqs_ : (THR220) (GLN275) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
d2daka_ : (GLU10) (ASP50) [view usage] : a.5.2.0 |RuvA C-terminal domain-like |UBA-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1c3ya_ : (LEU61) (ASN106) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Thp12-carrier protein |Yellow mealworm (Tenebrio molitor) [TaxId: 7067]
d2nvua_ : (ASN421) (TYR485) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d2knza_ : (PRO7) (LEU48) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2zkqm1 : (LYS25) (PRO74) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d4jn6a2 : (TYR289) (GLY341) [view usage] : a.5.7.0 |RuvA C-terminal domain-like |post-HMGL domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1rqba1 : (GLY309) (MSE364) [view usage] : a.5.7.2 |RuvA C-terminal domain-like |post-HMGL domain-like |Conserved carboxylase domain |Transcarboxylase 5S subunit, C-terminal domain |Propionibacterium freudenreichii shermanii [TaxId: 1752]
d1yova_ : (ILE423) (TYR485) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d3izbm_ : (LYS27) (ASN75) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4p39a_ : (THR678) (ALA740) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |C5a anaphylotoxin |Human (Homo sapiens) [TaxId: 9606]
d2e5lm1 : (ARG14) (THR63) [view usage] : a.156.1.1 |S13-like H2TH domain |S13-like H2TH domain |Ribosomal protein S13 |Ribosomal protein S13 |Thermus thermophilus [TaxId: 274]
d1xfha_ : (MET311) (LEU363) [view usage] : f.49.1.1 |Proton glutamate symport protein |Proton glutamate symport protein |Proton glutamate symport protein |Proton glutamate symport protein |Pyrococcus horikoshii [TaxId: 53953]
d3vc6a1 : (LEU52) (ALA123) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Thermobispora bispora [TaxId: 469371]
d3f49s_ : (THR220) (GLN275) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus amyloliquefaciens [TaxId: 1390]
d1wgla_ : (GLU10) (MET49) [view usage] : a.5.2.4 |RuvA C-terminal domain-like |UBA-like |CUE domain |Toll-interacting protein |Human (Homo sapiens) [TaxId: 9606]
d4p39d_ : (THR678) (ILE742) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |C5a anaphylotoxin |Human (Homo sapiens) [TaxId: 9606]
d2apla1 : (LYS2) (GLN68) [view usage] : a.258.1.1 |PG0816-like |PG0816-like |PG0816-like |Hypothetical protein PG0816 |Porphyromonas gingivalis [TaxId: 837]
d1ot5a2 : (THR384) (LYS457) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Kexin, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2snie_ : (GLY219) (GLN275) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
d2dkla1 : (GLU17) (LYS60) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Trinucleotide repeat containing 6c protein, TNRC6C |Human (Homo sapiens) [TaxId: 9606]
d4oiya_ : (ASP887) (PHE930) [view usage] : a.118.3.0 |alpha-alpha superhelix |Sec7 domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d4lrtc2 : (LEU299) (ARG344) [view usage] : a.5.7.0 |RuvA C-terminal domain-like |post-HMGL domain-like |automated matches |automated matches |Thermomonospora curvata [TaxId: 471852]
d1ey1a_ : (ARG8) (THR57) [view usage] : a.79.1.1 |NusB-like |NusB-like |Antitermination factor NusB |Antitermination factor NusB |Escherichia coli [TaxId: 562]
d2o5hb_ : (HIS7) (GLY63) [view usage] : d.363.1.1 |NMB0513-like |NMB0513-like |NMB0513-like |Hypothetical protein NMB0513 |Neisseria meningitidis [TaxId: 487]
d1c05a_ : (GLU5) (ARG52) [view usage] : d.66.1.2 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |Ribosomal protein S4 (bacteria) |Ribosomal protein S4 |Bacillus stearothermophilus [TaxId: 1422]
d1vdla_ : (HIS23) (ASN65) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Ubiquitin carboxyl-terminal hydrolase 25 |Mouse (Mus musculus) [TaxId: 10090]
d2pyqa1 : (THR52) (GLY107) [view usage] : a.279.1.1 |Jann4075-like |Jann4075-like |Jann4075-like |Uncharacterized protein Jann4075 |Jannaschia sp. CCS1 [TaxId: 290400]
d1aipc1 : (SER2) (ALA51) [view usage] : a.5.2.2 |RuvA C-terminal domain-like |UBA-like |TS-N domain |Elongation factor Ts (EF-Ts), N-terminal domain |Thermus thermophilus [TaxId: 274]
d4q7ja1 : (ALA5) (ASN54) [view usage] : a.5.2.2 |RuvA C-terminal domain-like |UBA-like |TS-N domain |Elongation factor Ts (EF-Ts), N-terminal domain |Escherichia coli [TaxId: 562]
d2dbta_ : (SER94) (THR148) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces griseus [TaxId: 1911]
d1miya1 : (ASN350) (CYS404) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Bacillus stearothermophilus [TaxId: 1422]
d3b7qb1 : (THR26) (GLU81) [view usage] : a.5.3.0 |RuvA C-terminal domain-like |CRAL/TRIO N-terminal domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4jn6c2 : (TYR289) (ASP339) [view usage] : a.5.7.0 |RuvA C-terminal domain-like |post-HMGL domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2cp9a1 : (LYS10) (LYS51) [view usage] : a.5.2.2 |RuvA C-terminal domain-like |UBA-like |TS-N domain |Elongation factor Ts (EF-Ts), N-terminal domain |Human (Homo sapiens), mitochondrial [TaxId: 9606]
d3w67a1 : (LEU28) (CYS80) [view usage] : a.5.3.0 |RuvA C-terminal domain-like |CRAL/TRIO N-terminal domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2rrua_ : (PRO9) (THR47) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2cjla_ : (SER15) (GLU68) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1bh6a_ : (GLY219) (GLN275) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus licheniformis [TaxId: 1402]
d1ttea1 : (ASP169) (LYS215) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Ubiquitin-protein ligase ubc1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1wjia_ : (ASP9) (ASN48) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Tudor domain containing protein 3, TDRD3 |Human (Homo sapiens) [TaxId: 9606]
d1wmda2 : (THR254) (VAL318) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Alkaline serine protease kp-43, N-terminal domain |Bacillus sp. KSM-KP43 [TaxId: 109322]
d1n1za2 : (LEU274) (TYR354) [view usage] : a.128.1.3 |Terpenoid synthases |Terpenoid synthases |Terpenoid cyclase C-terminal domain |(+)-bornyl diphosphate synthase |Garden sage (Salvia officinalis) [TaxId: 38868]
d3hbda_ : (SER54) (GLU113) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Picea abies [TaxId: 3329]
d1ojlb_ : (ASP318) (LEU371) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Salmonella typhimurium [TaxId: 602]
d1aiph1 : (GLU5) (ALA51) [view usage] : a.5.2.2 |RuvA C-terminal domain-like |UBA-like |TS-N domain |Elongation factor Ts (EF-Ts), N-terminal domain |Thermus thermophilus [TaxId: 274]
d1tzva_ : (PRO4) (ASN57) [view usage] : a.79.1.1 |NusB-like |NusB-like |Antitermination factor NusB |Antitermination factor NusB |Thermotoga maritima [TaxId: 2336]
d1iblm_ : (ARG14) (TRP64) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Thermus thermophilus [TaxId: 274]
d2fq4a2 : (GLN126) (GLU187) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Transcriptional regulator BC3163 |Bacillus cereus [TaxId: 1396]
d1nq4a_ : (SER41) (GLY83) [view usage] : a.28.1.1 |Acyl carrier protein-like |ACP-like |Acyl-carrier protein (ACP) |Oxytetracycline polyketide synthase acyl carrier |Streptomyces rimosus [TaxId: 1927]
d1s02a_ : (GLY219) (GLN275) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
d1v6ca_ : (GLY367) (SER431) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Alkaline serine protease Apa1 |Pseudoalteromonas sp. AS-11 [TaxId: 247492]
d1fjgm_ : (ARG14) (THR63) [view usage] : a.156.1.1 |S13-like H2TH domain |S13-like H2TH domain |Ribosomal protein S13 |Ribosomal protein S13 |Thermus thermophilus [TaxId: 274]
d1or7b2 : (HIS31) (GLN89) [view usage] : a.177.1.1 |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |Sigma2 domain of RNA polymerase sigma factors |SigmaE factor (RpoE) |Escherichia coli [TaxId: 562]
d1ou0c_ : (SER17) (LEU52) [view usage] : c.23.17.1 |Flavodoxin-like |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8x methylmutase related protein |Thermoplasma acidophilum [TaxId: 2303]
d1xb2b1 : (SER56) (LEU110) [view usage] : a.5.2.2 |RuvA C-terminal domain-like |UBA-like |TS-N domain |Elongation factor Ts (EF-Ts), N-terminal domain |Cow (Bos taurus), mitochondrial [TaxId: 9913]
d1ghca_ : (SER5) (LYS56) [view usage] : a.4.5.13 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Linker histone H1/H5 |Histone H1, globular domain |Chicken (Gallus gallus) [TaxId: 9031]
d1l8qa2 : (ASP242) (LEU288) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Chromosomal replication initiation factor DnaA |Aquifex aeolicus [TaxId: 63363]
d1r64a2 : (THR384) (LYS457) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Kexin, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vg5a_ : (SER29) (SER66) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Rhomboid family protein At3g58460 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4tlga1 : (SER9) (GLN65) [view usage] : a.5.3.0 |RuvA C-terminal domain-like |CRAL/TRIO N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wgna_ : (SER16) (SER58) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |Ubiquitin-associated protein 1, UBAP1 |Human (Homo sapiens) [TaxId: 9606]
d1go5a_ : (PRO16) (LYS58) [view usage] : a.5.2.3 |RuvA C-terminal domain-like |UBA-like |TAP-C domain-like |FG-binding, C-terminal domain of TAP |Human (Homo sapiens) [TaxId: 9606]
d1scja_ : (GLY219) (GLN275) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus subtilis, E [TaxId: 1423]
d1ou0a_ : (SER17) (LEU52) [view usage] : c.23.17.1 |Flavodoxin-like |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8x methylmutase related protein |Thermoplasma acidophilum [TaxId: 2303]
d2mgwa_ : (ASP915) (ASN958) [view usage] : a.5.2.1 |RuvA C-terminal domain-like |UBA-like |UBA domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4q7je1 : (LEU7) (ALA52) [view usage] : a.5.2.2 |RuvA C-terminal domain-like |UBA-like |TS-N domain |Elongation factor Ts (EF-Ts), N-terminal domain |Escherichia coli [TaxId: 562]
d1wvva_ : (SER94) (GLN147) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Streptomyces griseus [TaxId: 1911]
d1x3oa_ : (LEU45) (LEU79) [view usage] : a.28.1.1 |Acyl carrier protein-like |ACP-like |Acyl-carrier protein (ACP) |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3br3a2 : (GLU120) (SER187) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Multidrug binding protein QacR |Staphylococcus aureus [TaxId: 1280]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, a.118, a.128, c.23, c.37, d.2, c.41, c.111, a.4, a.39, d.54, a.79, d.6, a.28, a.156, a.177, f.49, a.258, a.121, d.66,
a.5, a.173, a.279, a.50, d.363