Tableau information
Concept source: d3g6ta_ amino acid (a.a.) range (CYS457)(GLY505)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(CYS457) (VAL468) H1
(VAL468) (ASN474) H2
(CYS493) (GLY505) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -79.3° H2
H3 -95.8° -139.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fgea4 : (GLY172) (ASP206) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Presequence protease 1, PREP1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3hv1a_ : (ASP242) (GLY281) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus thermophilus [TaxId: 264199]
d2fo7a1 : (GLU97) (PRO134) [view usage] : k.38.1.1 |TPR domain-based design |TPR domain-based design |TPR domain-based design |An 8 repeat consensus TPR superhelix |Synthetic
d2gpsa2 : (GLY83) (GLY114) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Biotin carboxylase (BC), N-terminal domain |Escherichia coli [TaxId: 562]
d3jxya_ : (TYR157) (ASN196) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Bacillus cereus [TaxId: 222523]
d2g4aa_ : (ARG59) (MET106) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hmka2 : (VAL209) (LEU227) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas sp. [TaxId: 69011]
d1m9yc_ : (ARG100) (SER146) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |HIV-1 capsid protein |Human immunodeficiency virus type 1 [TaxId: 11676]
d1m8yb_ : (ILE1144) (MET1169) [view usage] : a.118.1.8 |alpha-alpha superhelix |ARM repeat |Pumilio repeat |Pumilio 1 |Human (Homo sapiens) [TaxId: 9606]
d1eg9a2 : (VAL209) (LEU227) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas putida [TaxId: 303]
d3m8va_ : (ARG94) (LEU116) [view usage] : d.42.1.0 |POZ domain |POZ domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4aqda_ : (MET437) (LYS476) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ik8b1 : (PHE66) (ILE104) [view usage] : a.91.1.1 |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling 16, RGS16 |Human (Homo sapiens) [TaxId: 9606]
d1zixa_ : (GLY201) (SER233) [view usage] : c.69.1.9 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Dienelactone hydrolase |automated matches |Pseudomonas putida [TaxId: 303]
d4e89a_ : (SER584) (LYS628) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Xenotropic mulv-related virus [TaxId: 373193]
d2kyha_ : (ILE94) (LYS147) [view usage] : f.14.1.1 |Gated ion channels |Voltage-gated potassium channels |Voltage-gated potassium channels |automated matches |Aeropyrum pernix [TaxId: 56636]
d1eh5a_ : (SER157) (TRP186) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |Palmitoyl protein thioesterase 1 |Cow (Bos taurus) [TaxId: 9913]
d2bmoa2 : (VAL207) (ILE225) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Nitrobenzene dioxygenase alpha subunit, NBDO-alpha |Comamonas sp. JS765 [TaxId: 58226]
d3m4ta_ : (ARG94) (LEU116) [view usage] : d.42.1.0 |POZ domain |POZ domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mv8a3 : (ARG354) (LEU380) [view usage] : c.26.3.1 |Adenine nucleotide alpha hydrolase-like |UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |GDP-mannose 6-dehydrogenase, GDP-binding domain |Pseudomonas aeruginosa [TaxId: 287]
d1ibrd_ : (GLU120) (GLN159) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d1ibrd_ : (PHE313) (GLU360) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d1ukla_ : (PRO440) (ALA485) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Mouse (Mus musculus) [TaxId: 10090]
d1dv2a2 : (GLY83) (GLY114) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Biotin carboxylase (BC), N-terminal domain |Escherichia coli [TaxId: 562]
d1zr9a1 : (SER55) (ARG86) [view usage] : g.37.1.4 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |HkH motif-containing C2H2 finger |Zinc finger protein 593, ZNF593 |Human (Homo sapiens) [TaxId: 9606]
d1ibrb_ : (GLU120) (GLN159) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d4di0b_ : (MET1) (GLY68) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d3l0la_ : (GLY470) (LEU505) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3l0lb_ : (LYS471) (SER507) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qgka_ : (PRO440) (VAL487) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d1wq1g_ : (ASP994) (GLN1037) [view usage] : a.116.1.2 |GTPase activation domain, GAP |GTPase activation domain, GAP |p120GAP domain-like |p120GAP domain |Human (Homo sapiens) [TaxId: 9606]
d1nu7d2 : (ASP241) (ASN267) [view usage] : a.8.6.1 |immunoglobulin/albumin-binding domain-like |Staphylocoagulase |Staphylocoagulase |Staphylocoagulase |Staphylococcus aureus [TaxId: 1280]
d4ctha_ : (SER362) (LEU397) [view usage] : d.92.1.4 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neutral endopeptidase (neprilysin) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3rv4a1 : (GLY83) (GLY114) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Biotin carboxylase (BC), N-terminal domain |Escherichia coli [TaxId: 562]
d2cqma1 : (LEU28) (THR81) [view usage] : d.188.1.1 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Human (Homo sapiens) [TaxId: 9606]
d1o7ga2 : (VAL209) (LEU227) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas putida [TaxId: 303]
d4cxia_ : (GLY148) (GLN178) [view usage] : d.42.1.0 |POZ domain |POZ domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2j7aa_ : (ASN484) (LEU503) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d1stza2 : (VAL200) (ILE224) [view usage] : d.110.2.3 |Profilin-like |GAF domain-like |HrcA C-terminal domain-like |Heat-inducible transcription repressor HrcA, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d2ovya_ : (ASP705) (ARG757) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3v93f_ : (ASP481) (ILE522) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d4kenb_ : (THR226) (SER257) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
d3jy1a_ : (TYR157) (ALA193) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Bacillus cereus [TaxId: 222523]
d2gpwd2 : (GLY83) (GLY114) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Biotin carboxylase (BC), N-terminal domain |Escherichia coli [TaxId: 562]
d1dv2b2 : (GLY83) (GLY114) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Biotin carboxylase (BC), N-terminal domain |Escherichia coli [TaxId: 562]
d4j8eb_ : (GLU175) (ASP213) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1wera_ : (ARG993) (GLN1037) [view usage] : a.116.1.2 |GTPase activation domain, GAP |GTPase activation domain, GAP |p120GAP domain-like |p120GAP domain |Human (Homo sapiens) [TaxId: 9606]
d3hh8a_ : (HIS139) (LYS188) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |automated matches |Streptococcus pyogenes [TaxId: 301447]
d1ib2a_ : (VAL1069) (CYS1102) [view usage] : a.118.1.8 |alpha-alpha superhelix |ARM repeat |Pumilio repeat |Pumilio 1 |Human (Homo sapiens) [TaxId: 9606]
d1ib2a_ : (LEU1112) (ARG1145) [view usage] : a.118.1.8 |alpha-alpha superhelix |ARM repeat |Pumilio repeat |Pumilio 1 |Human (Homo sapiens) [TaxId: 9606]
d4o98a_ : (PRO165) (ALA197) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas oleovorans [TaxId: 301]
d2dznc_ : (GLY163) (GLY198) [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3o9ma_ : (GLU441) (LYS476) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1stzb2 : (VAL200) (ILE224) [view usage] : d.110.2.3 |Profilin-like |GAF domain-like |HrcA C-terminal domain-like |Heat-inducible transcription repressor HrcA, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1m9xc_ : (ARG100) (SER146) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |HIV-1 capsid protein |Human immunodeficiency virus type 1 [TaxId: 11676]
d1n4pa_ : (GLY288) (GLN326) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4h3ya_ : (TRP221) (LYS254) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d2hmja2 : (VAL209) (LEU227) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas sp. [TaxId: 306]
d2i6ha1 : (PHE39) (PHE76) [view usage] : a.118.8.5 |alpha-alpha superhelix |TPR-like |Atu0120-like |Hypothetical protein Atu0120 |Agrobacterium tumefaciens [TaxId: 358]
d2axla1 : (ILE31) (GLN62) [view usage] : a.4.5.43 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |RecQ helicase DNA-binding domain-like |Werner syndrome ATP-dependent helicase WRN |Human (Homo sapiens) [TaxId: 9606]
d3l0ja_ : (GLY470) (LEU505) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bnca2 : (GLY83) (GLY114) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Biotin carboxylase (BC), N-terminal domain |Escherichia coli [TaxId: 562]
d1m32a_ : (GLU208) (HIS236) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |2-aminoethylphosphonate transaminase |Salmonella typhimurium [TaxId: 90371]
d1tiva_ : (VAL4) (PRO70) [view usage] : j.40.1.1 |Transactivation protein TAT |Transactivation protein TAT |Transactivation protein TAT |Transactivation protein TAT |Human immunodeficiency virus type 1 [TaxId: 11676]
d1m8wa_ : (ILE853) (ILE885) [view usage] : a.118.1.8 |alpha-alpha superhelix |ARM repeat |Pumilio repeat |Pumilio 1 |Human (Homo sapiens) [TaxId: 9606]
d1f4ua_ : (GLY45) (THR67) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp119 |Sulfolobus solfataricus [TaxId: 2287]
d3jx7a_ : (TYR157) (ASN196) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Bacillus cereus [TaxId: 222523]
d3g6ta_ : (CYS457) (GLY505) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1cs3a_ : (LYS95) (LEU122) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain |Human (Homo sapiens) [TaxId: 9606]
d1jspb_ : (GLY1145) (MET1193) [view usage] : a.29.2.1 |Bromodomain-like |Bromodomain |Bromodomain |CREB-binding protein, CBP |Human (Homo sapiens) [TaxId: 9606]
d1o6pa_ : (GLU120) (ILE161) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d1qiba_ : (ASP214) (TYR246) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Gelatinase A |Human (Homo sapiens) [TaxId: 9606]
d2j7ah_ : (ASN484) (LEU503) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.67, c.69, c.94, a.104, a.118, c.26, c.92, d.157, d.92, a.211, d.129, d.185, c.55, a.123, d.110, d.211, a.25, c.116, k.38,
a.4, a.138, c.30, a.29, a.91, d.42, a.73, a.116, j.40, a.8, g.39, g.37, f.14, d.188