Tableau information
Concept source: d2b8za_ amino acid (a.a.) range (THR22)(GLY95)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR22) (THR28) H1
(THR40) (ASP62) H2
(THR69) (GLY95) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 129.4° H2
H3 -47.4° -154.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2zyaa2 : (LYS314) (ASN381) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4gypd1 : (VAL59) (LEU127) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1r8db_ : (SER42) (LEU105) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Multidrug transporter activator MtaN |Bacillus subtilis [TaxId: 1423]
d1bqta_ : (GLY7) (TYR60) [view usage] : g.1.1.1 |Insulin-like |Insulin-like |Insulin-like |Insulin-like growth factor |Human (Homo sapiens) [TaxId: 9606]
d1r8da_ : (SER42) (LEU105) [view usage] : a.6.1.3 |Putative DNA-binding domain |Putative DNA-binding domain |DNA-binding N-terminal domain of transcription activators |Multidrug transporter activator MtaN |Bacillus subtilis [TaxId: 1423]
d3u5ih_ : (LYS5) (TYR70) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1itwa_ : (PRO624) (ASN694) [view usage] : c.77.1.2 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Monomeric isocitrate dehydrogenase |Monomeric isocitrate dehydrogenase |Azotobacter vinelandii [TaxId: 354]
d1lvla3 : (LEU413) (GLY453) [view usage] : d.87.1.1 |CO dehydrogenase flavoprotein C-domain-like |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |Dihydrolipoamide dehydrogenase |Pseudomonas putida [TaxId: 303]
d1r73a_ : (ALA3) (LEU62) [view usage] : a.2.2.1 |Long alpha-hairpin |Ribosomal protein L29 (L29p) |Ribosomal protein L29 (L29p) |Ribosomal protein L29 (L29p) |Thermotoga maritima [TaxId: 2336]
d1m2oa1 : (GLN525) (SER593) [view usage] : a.71.2.1 |ERP29 C domain-like |Helical domain of Sec23/24 |Helical domain of Sec23/24 |Sec23 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1khoa1 : (PHE175) (SER244) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium perfringens, different strains [TaxId: 1502]
d1olpd1 : (ASP173) (SER244) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium absonum [TaxId: 29369]
d1yl3w1 : (VAL5) (GLY64) [view usage] : a.2.2.1 |Long alpha-hairpin |Ribosomal protein L29 (L29p) |Ribosomal protein L29 (L29p) |Ribosomal protein L29 (L29p) |Thermus thermophilus [TaxId: 274]
d2gsvb_ : (SER6) (GLY69) [view usage] : a.23.7.1 |Open three-helical up-and-down bundle |YvfG-like |YvfG-like |Hypothetical protein YvfG |Bacillus subtilis [TaxId: 1423]
d2iyoa2 : (LYS316) (ASP383) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Lactococcus lactis [TaxId: 1358]
d4a17u_ : (VAL7) (PHE74) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1k19a_ : (ASN61) (ALA105) [view usage] : a.118.21.1 |alpha-alpha superhelix |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Chemosensory protein Csp2 |Cabbage moth (Mamestra brassicae) [TaxId: 55057]
d1pgna1 : (LYS315) (ASN382) [view usage] : a.100.1.1 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain |6-phosphogluconate dehydrogenase (6PGD) |Sheep (Ovis orientalis aries) [TaxId: 9940]
d3bbou1 : (SER42) (HIS89) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d1ca1a1 : (PHE175) (GLY246) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium perfringens, different strains [TaxId: 1502]
d2enda_ : (ALA13) (TYR61) [view usage] : a.18.1.1 |T4 endonuclease V |T4 endonuclease V |T4 endonuclease V |T4 endonuclease V |Bacteriophage T4 [TaxId: 10665]
d1oxba_ : (ASN10) (GLY74) [view usage] : a.24.10.2 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Phosphorelay protein-like |Phosphorelay protein ypd1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1lbea_ : (GLU6) (ALA65) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |California sea hare (Aplysia californica) [TaxId: 6500]
d3zwmb_ : (LEU7) (ALA65) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1miya1 : (GLU146) (ASN183) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Bacillus stearothermophilus [TaxId: 1422]
d3hsqa_ : (SER203) (SER251) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Leptospira interrogans [TaxId: 173]
d1i4ja_ : (SER13) (ASP63) [view usage] : d.55.1.1 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]
d3fwna2 : (ALA178) (LYS241) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3usya_ : (LEU208) (MET245) [view usage] : a.118.14.0 |alpha-alpha superhelix |FliG |automated matches |automated matches |Helicobacter pylori [TaxId: 210]
d1e68a_ : (MET1) (GLY36) [view usage] : a.64.2.1 |Saposin-like |Bacteriocin AS-48 |Bacteriocin AS-48 |Bacteriocin AS-48 |Enterococcus faecalis [TaxId: 1351]
d1eyvb_ : (HIS11) (GLU64) [view usage] : a.79.1.1 |NusB-like |NusB-like |Antitermination factor NusB |Antitermination factor NusB |Mycobacterium tuberculosis [TaxId: 1773]
d4geva_ : (LEU52) (TRP83) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d1isfa_ : (HIS10) (SER65) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |Bone marror stromal cell antigen 1, BST-1/CD157 (ADP ribosyl cyclase-2) |Human (Homo sapiens) [TaxId: 9606]
d2pg0a1 : (SER45) (ASN95) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d4ntmf_ : (LYS63) (PRO83) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
d1txoa_ : (ALA45) (MSE97) [view usage] : d.219.1.1 |PP2C-like |PP2C-like |PP2C-like |putative serine/threonine phosphatase pstp/ppp |Mycobacterium tuberculosis [TaxId: 1773]
d1miva1 : (GLU146) (ASN183) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Bacillus stearothermophilus [TaxId: 1422]
d1siqa2 : (GLU51) (ALA110) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Glutaryl-CoA dehydrogenase GCDH |Human (Homo sapiens) [TaxId: 9606]
d1w2bu_ : (VAL5) (GLY61) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Haloarcula marismortui [TaxId: 2238]
d3doja2 : (GLY164) (GLY217) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1hbmb1 : (LEU299) (HIS364) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3qn0a_ : (LYS62) (PRO82) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
d3g0oa2 : (ALA173) (ASN225) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Salmonella typhimurium [TaxId: 602]
d1qm6a1 : (PHE175) (GLY246) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium perfringens, different strains [TaxId: 1502]
d2zyab2 : (ALA178) (LYS241) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2w8za2 : (ALA177) (LYS240) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d1wtja_ : (SER14) (GLY69) [view usage] : c.122.1.0 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 323]
d1pgja1 : (GLY323) (ASN389) [view usage] : a.100.1.1 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain |6-phosphogluconate dehydrogenase (6PGD) |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1r12a_ : (GLU6) (ALA65) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |California sea hare (Aplysia californica) [TaxId: 6500]
d4v192_ : (CYS89) (GLN159) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d4dllb2 : (SER194) (LEU246) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Polaromonas sp. [TaxId: 296591]
d2gsva1 : (SER6) (GLY69) [view usage] : a.23.7.1 |Open three-helical up-and-down bundle |YvfG-like |YvfG-like |Hypothetical protein YvfG |Bacillus subtilis [TaxId: 1423]
d3zwmd_ : (GLU6) (ALA65) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1ddfa_ : (GLU256) (ILE302) [view usage] : a.77.1.2 |DEATH domain |DEATH domain |DEATH domain, DD |Fas |Human (Homo sapiens) [TaxId: 9606]
d2zyga2 : (ALA178) (LYS241) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d3zwnb_ : (GLU6) (ALA65) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1u61a_ : (GLU67) (GLU128) [view usage] : a.149.1.1 |RNase III domain-like |RNase III domain-like |RNase III catalytic domain-like |Hypothetical protein BC0111 |Bacillus cereus [TaxId: 1396]
d3wjaa1 : (GLN61) (SER102) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x4ta1 : (LEU16) (GLY79) [view usage] : a.2.15.1 |Long alpha-hairpin |ISY1 domain-like |ISY1 N-terminal domain-like |Pre-mRNA-splicing factor ISY1 homolog |Mouse (Mus musculus) [TaxId: 10090]
d2w8zb2 : (ALA177) (LYS240) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d2zygb2 : (ALA178) (LYS241) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1yf3a1 : (TRP67) (GLY110) [view usage] : c.66.1.28 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N6 adenine-specific DNA methylase, DAM |DNA methylase T4DAM |Bacteriophage T4 [TaxId: 10665]
d3zwmc_ : (GLU6) (ALA65) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1vpda1 : (ALA167) (ALA219) [view usage] : a.100.1.1 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain |Hydroxyisobutyrate dehydrogenase |Salmonella typhimurium [TaxId: 90371]
d1dawa_ : (ASP237) (GLY274) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Maize (Zea mays) [TaxId: 4577]
d1j1wa_ : (PRO624) (PHE684) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |NADP-dependent isocitrate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.81, i.1, a.118, d.117, c.66, c.77, c.23, d.144, e.6, d.96, c.122, d.87, a.100, d.219, c.58, a.23, d.54, a.124, a.79, a.77,
a.24, a.26, a.149, a.71, a.64, a.6, a.2, a.89, a.173, d.55, g.1, a.18