Tableau information
Concept source: d1n8vb_ amino acid (a.a.) range (LYS20)(LYS75)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS20) (GLU32) H1
(SER37) (ASN53) H2
(THR59) (LYS75) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -56.2° H2
H3 -105.5° -92.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3k2ha2 : (TRP307) (ARG338) [view usage] : d.117.1.0 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |automated matches |Babesia bovis [TaxId: 484906]
d1i00a_ : (TRP109) (ARG140) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Human (Homo sapiens) [TaxId: 9606]
d2ma9c_ : (PRO48) (MET87) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |Elongin C |Human (Homo sapiens) [TaxId: 9606]
d3l4da_ : (GLN224) (ALA267) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Leishmania infantum [TaxId: 5671]
d4upvb_ : (SER201) (GLY242) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d4c7va1 : (SER254) (ASN280) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Lactobacillus salivarius [TaxId: 362948]
d4upec_ : (SER201) (GLY242) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d1ju6a_ : (TRP109) (ARG140) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Human (Homo sapiens) [TaxId: 9606]
d2rdaa_ : (TRP109) (ARG140) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Human (Homo sapiens) [TaxId: 9606]
d1r9ja2 : (SER252) (GLY278) [view usage] : c.36.1.10 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like PP module |Transketolase (TK), PP module |Leishmania mexicana mexicana [TaxId: 44270]
d3o5ca1 : (PRO37) (GLY69) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d2rd8a_ : (TRP109) (ARG140) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Human (Homo sapiens) [TaxId: 9606]
d3bgra1 : (THR253) (ARG284) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2noga1 : (ARG763) (GLY825) [view usage] : a.187.1.0 |HAND domain of the nucleosome remodeling ATPase ISWI |HAND domain of the nucleosome remodeling ATPase ISWI |automated matches |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
d4tx6b_ : (THR234) (SER262) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
d3b4ua_ : (ASP194) (LEU217) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d1hzwa_ : (TRP109) (ARG140) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Human (Homo sapiens) [TaxId: 9606]
d4einb_ : (ARG101) (ARG134) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1w63a_ : (LYS322) (ASP356) [view usage] : i.23.1.1 |clathrin assemblies |clathrin assemblies |clathrin assemblies |AP1 clathrin adaptor core |Mouse (Mus musculus) [TaxId: 10090]
d2eboa_ : (LEU561) (ALA609) [view usage] : h.3.2.1 |Stalk segment of viral fusion proteins |Virus ectodomain |Virus ectodomain |Core structure of Ebo gp2 |Ebola virus [TaxId: 205488]
d2xtka_ : (THR234) (SER262) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
d1qd1a2 : (ASP296) (VAL326) [view usage] : d.58.34.1 |Ferredoxin-like |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Pig (Sus scrofa) [TaxId: 9823]
d2ckaa1 : (ARG2054) (ARG2081) [view usage] : d.76.2.1 |GYF/BRK domain-like |BRK domain-like |BRK domain-like |Chromodomain-helicase-dna-binding protein 8, CHD8 |Human (Homo sapiens) [TaxId: 9606]
d3dgac_ : (TRP404) (ARG435) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2b1xa1 : (SER3) (GLY43) [view usage] : b.33.1.2 |ISP domain |ISP domain |Ring hydroxylating alpha subunit ISP domain |Naphthalene 1,2-dioxygenase alpha subunit, N-domain |Rhodococcus sp. ncimb12038 [TaxId: 92694]
d1tzva_ : (PRO99) (GLU141) [view usage] : a.79.1.1 |NusB-like |NusB-like |Antitermination factor NusB |Antitermination factor NusB |Thermotoga maritima [TaxId: 2336]
d1hnwd_ : (ARG10) (LYS46) [view usage] : d.66.1.2 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |Ribosomal protein S4 (bacteria) |Ribosomal protein S4 |Thermus thermophilus [TaxId: 274]
d4ozte_ : (ILE476) (TRP516) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Pediculus humanus [TaxId: 121224]
d1neqa_ : (LYS49) (GLN71) [view usage] : a.35.1.2 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Phage repressors |Ner |Bacteriophage Mu [TaxId: 10677]
d2li6a_ : (GLU14) (GLY62) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3gg5d_ : (TRP109) (ARG140) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x3aa1 : (THR13) (ASP56) [view usage] : a.240.1.1 |BSD domain-like |BSD domain-like |BSD domain |Synapse associated protein 1, SYAP1 |Human (Homo sapiens) [TaxId: 9606]
d1ay0a1 : (SER254) (GLY280) [view usage] : c.36.1.10 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like PP module |Transketolase (TK), PP module |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4pusa_ : (PRO54) (LEU84) [view usage] : a.95.1.1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |Influenza virus matrix protein M1 |automated matches |Influenza a virus [TaxId: 381518]
d1gpua1 : (SER254) (GLY280) [view usage] : c.36.1.10 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like PP module |Transketolase (TK), PP module |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1qd1b2 : (ASP2296) (VAL2326) [view usage] : d.58.34.1 |Ferredoxin-like |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Pig (Sus scrofa) [TaxId: 9823]
d4ffue_ : (PHE40) (ALA73) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1pnob_ : (ASN392) (GLY419) [view usage] : c.31.1.4 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Transhydrogenase domain III (dIII) |Transhydrogenase domain III (dIII) |Rhodospirillum rubrum [TaxId: 1085]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, a.104, d.58, a.118, d.117, c.36, c.31, a.123, d.38, i.23, a.4, h.3, a.3, d.42, e.19, a.79, b.33, a.35, a.95,
d.66, d.76, a.240, a.187