Tableau information
Concept source: d2pkga1 amino acid (a.a.) range (LEU404)(LEU434)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU404) (ALA412) H1
(TRP417) (MET427) H2
(PRO428) (LEU434) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -127.1° H2
H3 -146.4° -43.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1zb6a1 : (PRO74) (LYS100) [view usage] : d.313.1.1 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |Prenyltransferase-like |Aromatic prenyltransferase |Streptomyces sp. CL190 [TaxId: 93372]
d3o0ja_ : (ILE450) (ILE484) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hcba2 : (THR84) (ASN107) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Chromosomal replication initiation factor DnaA |Aquifex aeolicus [TaxId: 63363]
d3iaka_ : (VAL377) (SER408) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase pde4d |Human (Homo sapiens) [TaxId: 9606]
d1fzia_ : (GLU243) (SER294) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d3g7ca_ : (ASP426) (THR522) [view usage] : h.4.17.1 |Antiparallel coiled-coil |occludin/ELL-like |Occludin/ELL domain |Occludin |Human (Homo sapiens) [TaxId: 9606]
d4g7ra_ : (MET103) (ASN174) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1mn8d_ : (ARG58) (PHE91) [view usage] : a.61.1.6 |Retroviral matrix proteins |Retroviral matrix proteins |MMLV matrix protein-like |MMLV matrix protein |Moloney murine leukemia virus, MoMLV [TaxId: 11801]
d3sl3c_ : (ASP374) (SER408) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase pde4d |Human (Homo sapiens) [TaxId: 9606]
d1fcua_ : (TYR183) (GLU219) [view usage] : c.1.8.9 |TIM beta/alpha-barrel |(Trans)glycosidases |Bee venom hyaluronidase |Bee venom hyaluronidase |Honeybee (Apis mellifera) [TaxId: 7460]
d1mn8b_ : (ARG58) (PHE91) [view usage] : a.61.1.6 |Retroviral matrix proteins |Retroviral matrix proteins |MMLV matrix protein-like |MMLV matrix protein |Moloney murine leukemia virus, MoMLV [TaxId: 11801]
d1f59a_ : (THR143) (SER170) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d1zcwa_ : (PRO74) (LYS100) [view usage] : d.313.1.1 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |Prenyltransferase-like |Aromatic prenyltransferase |Streptomyces sp. CL190 [TaxId: 93372]
d1bgfa_ : (SER2) (ASP23) [view usage] : a.90.1.1 |Transcription factor STAT-4 N-domain |Transcription factor STAT-4 N-domain |Transcription factor STAT-4 N-domain |Transcription factor STAT-4 N-domain |Mouse (Mus musculus) [TaxId: 10090]
d1yova_ : (PRO282) (GLN320) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d2c74a_ : (PHE107) (GLU136) [view usage] : a.118.7.1 |alpha-alpha superhelix |14-3-3 protein |14-3-3 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3o3ta2 : (ASN100) (SER146) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3s8ga_ : (THR156) (GLY214) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d4hasb_ : (SER237) (SER272) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wpaa1 : (ASP426) (THR522) [view usage] : h.4.17.1 |Antiparallel coiled-coil |occludin/ELL-like |Occludin/ELL domain |Occludin |Human (Homo sapiens) [TaxId: 9606]
d2r8qa_ : (ALA895) (ARG931) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Leishmania major [TaxId: 5664]
d2pvra_ : (ASP120) (GLY151) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d2qyla_ : (GLU440) (ILE484) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b |Human (Homo sapiens) [TaxId: 9606]
d1qzpa_ : (PRO15) (LEU42) [view usage] : a.14.1.1 |VHP, Villin headpiece domain |VHP, Villin headpiece domain |VHP, Villin headpiece domain |Dematin |Human (Homo sapiens) [TaxId: 9606]
d4jwxa_ : (SER173) (ASN193) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4etna_ : (HIS85) (VAL102) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2pf4a_ : (LEU16) (GLY43) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Mouse (Mus musculus) [TaxId: 10090]
d1mkda_ : (ILE473) (ILE507) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase pde4d |Human (Homo sapiens) [TaxId: 9606]
d3awpa_ : (GLY262) (ARG283) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Sphingomonas paucimobilis [TaxId: 13689]
d3nqyb_ : (PRO408) (THR444) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |automated matches |Pseudoalteromonas sp. [TaxId: 234831]
d4bkha_ : (ASN115) (ASP155) [view usage] : a.135.1.1 |Tetraspanin |Tetraspanin |Tetraspanin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2j88a_ : (TYR183) (GLU219) [view usage] : c.1.8.9 |TIM beta/alpha-barrel |(Trans)glycosidases |Bee venom hyaluronidase |automated matches |Honeybee (Apis mellifera) [TaxId: 7460]
d4hasa_ : (SER237) (SER272) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3vnoa_ : (ALA158) (ALA202) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Sphingomonas paucimobilis [TaxId: 13689]
d1fjgi_ : (GLY69) (GLY100) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Ribosomal protein S9 |Thermus thermophilus [TaxId: 274]
d1mrla_ : (GLN170) (ASP198) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d1xoub_ : (GLY2) (THR84) [view usage] : a.231.1.2 |EspA/CesA-like |EspA/CesA-like |EspA chaperone CesA |EspA chaperone CesA |Escherichia coli [TaxId: 562]
d1oynb_ : (HIS378) (ILE410) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase pde4d |Human (Homo sapiens) [TaxId: 9606]
d1be3c3 : (ILE4) (LEU21) [view usage] : f.21.1.2 |Heme-binding four-helical bundle |Transmembrane di-heme cytochromes |Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Mitochondrial cytochrome b subunit, N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d1t6ca2 : (GLY239) (ILE277) [view usage] : c.55.1.8 |Ribonuclease H-like motif |Actin-like ATPase domain |Ppx/GppA phosphatase |Exopolyphosphatase Ppx |Aquifex aeolicus [TaxId: 63363]
d1t1ua2 : (ASN514) (ARG544) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Choline O-acetyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3qvma_ : (ARG147) (GLY174) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d4cg3a_ : (LYS216) (CYS241) [view usage] : c.69.1.16 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Lipase |automated matches |Thermobifida fusca [TaxId: 2021]
d2cdna_ : (THR31) (GLY56) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d2gtqa4 : (SER669) (ALA705) [view usage] : a.118.1.27 |alpha-alpha superhelix |ARM repeat |Aminopeptidase N (APN) C-terminal-like |Aminopeptidase N (APN) C-terminal domain |Neisseria meningitidis [TaxId: 122586]
d1pc3a_ : (ASN123) (ASN147) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Mycobacterium tuberculosis [TaxId: 1773]
d2o5fa_ : (THR141) (ARG168) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Hypothetical protein DR0079 |Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]
d1l3ga_ : (PRO79) (PHE102) [view usage] : d.34.1.1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1larb1 : (TRP1341) (TYR1379) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |RPTP Lar |Human (Homo sapiens) [TaxId: 9606]
d1j3ic_ : (PHE312) (MET337) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d4lrua_ : (ILE166) (GLU192) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |automated matches |Candida albicans [TaxId: 237561]
d1l8qa2 : (THR84) (ASN107) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Chromosomal replication initiation factor DnaA |Aquifex aeolicus [TaxId: 63363]
d3sr9a2 : (PHE1656) (ILE1695) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1mr9c_ : (ASP169) (ASN199) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d1k1xb3 : (ALA282) (VAL308) [view usage] : c.6.2.2 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |4-alpha-glucanotransferase, N-terminal domain |4-alpha-glucanotransferase, N-terminal domain |Thermococcus litoralis [TaxId: 2265]
d2woea_ : (MET183) (THR227) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 1085]
d1xawa1 : (ASP426) (THR522) [view usage] : h.4.17.1 |Antiparallel coiled-coil |occludin/ELL-like |Occludin/ELL domain |Occludin |Human (Homo sapiens) [TaxId: 9606]
d3apfa3 : (TYR589) (SER620) [view usage] : a.118.1.6 |alpha-alpha superhelix |ARM repeat |Phoshoinositide 3-kinase (PI3K) helical domain |Phoshoinositide 3-kinase (PI3K) helical domain |Human (Homo sapiens) [TaxId: 9606]
d2qykb_ : (VAL577) (ILE622) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qafb_ : (ALA66) (THR94) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]
d1m8wa_ : (ILE1148) (TYR1167) [view usage] : a.118.1.8 |alpha-alpha superhelix |ARM repeat |Pumilio repeat |Pumilio 1 |Human (Homo sapiens) [TaxId: 9606]
d1t72e_ : (ASP145) (SER212) [view usage] : a.7.12.1 |Spectrin repeat-like |PhoU-like |PhoU-like |Phosphate transport system protein PhoU |Aquifex aeolicus [TaxId: 63363]
d3swla2 : (ASN100) (VAL139) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kq6a_ : (ARG85) (LYS119) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |p47phox NADPH oxidase |Human (Homo sapiens) [TaxId: 9606]
d2jjra_ : (TYR164) (ASN206) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]
d1f5qb2 : (ARG191) (TYR223) [view usage] : a.74.1.1 |Cyclin-like |Cyclin-like |Cyclin |Viral cyclin |Murine herpesvirus 68 [TaxId: 33708]
d3mjwa3 : (TYR589) (SER620) [view usage] : a.118.1.6 |alpha-alpha superhelix |ARM repeat |Phoshoinositide 3-kinase (PI3K) helical domain |Phoshoinositide 3-kinase (PI3K) helical domain |Human (Homo sapiens) [TaxId: 9606]
d2wwea_ : (SER1271) (PHE1303) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ystl_ : (GLY32) (CYS92) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |L (light) subunit |Rhodobacter sphaeroides [TaxId: 1063]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, b.81, c.94, a.104, c.6, a.118, d.117, d.92, c.45, d.165, a.211, c.23, d.144, c.37, c.55, d.14, f.26, c.43, a.25,
f.21, f.24, c.111, a.45, a.74, d.113, h.4, c.44, a.61, a.209, a.7, a.14, d.313, d.34, d.189, a.135, a.90, a.231