Tableau information
Concept source: d1na3a_ amino acid (a.a.) range (TYR54)(LYS84)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR54) (GLU66) H1
(GLU66) (ALA72) H2
(ALA72) (LYS84) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 97.3° H2
H3 -151.8° -93.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1jbaa_ : (GLU148) (GLN185) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Guanylate cyclase activating protein 2, GCAP-2 |Cow (Bos taurus) [TaxId: 9913]
d2ejaa_ : (MET31) (LEU60) [view usage] : c.1.22.0 |TIM beta/alpha-barrel |UROD/MetE-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d3fhua_ : (ALA32) (MET77) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |automated matches |Salmonella typhi [TaxId: 601]
d1v54a_ : (SER335) (PHE377) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Mitochondrial cytochrome c oxidase, subunit I |Cow (Bos taurus) [TaxId: 9913]
d2ow6a3 : (ASP270) (GLY291) [view usage] : c.6.2.1 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |alpha-mannosidase |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1s4vb_ : (GLU51) (ALA105) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Vignain (bean endopeptidase) |Castor bean (Ricinus communis) [TaxId: 3988]
d1u0ma1 : (PHE167) (LEU187) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Putative polyketide synthase SCO1206 |Streptomyces coelicolor [TaxId: 1902]
d3omic_ : (LYS378) (PHE420) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |automated matches |Rhodobacter sphaeroides [TaxId: 272943]
d2p1ab_ : (GLY0) (GLY60) [view usage] : a.213.1.2 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |DinB-like |Hypothetical protein BCE2162 |Bacillus cereus [TaxId: 1396]
d2d2cb1 : (LEU110) (GLY144) [view usage] : f.32.1.1 |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Subunit IV of the cytochrome b6f complex |Mastigocladus laminosus [TaxId: 83541]
d1pbwa_ : (PRO129) (LEU191) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |p85 alpha subunit RhoGAP domain |Human (Homo sapiens) [TaxId: 9606]
d2hkva1 : (THR2) (VAL51) [view usage] : a.213.1.2 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |DinB-like |Hypothetical protein ExigDRAFT_2445 |Exiguobacterium sibiricum 255-15 [TaxId: 262543]
d1p30a2 : (THR761) (PHE797) [view usage] : b.121.2.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Adenovirus hexon |Adenovirus hexon |Human adenovirus type 5 [TaxId: 28285]
d3b0oa_ : (SER56) (ALA109) [view usage] : d.2.1.2 |Lysozyme-like |Lysozyme-like |C-type lysozyme |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zkea1 : (MET1) (LEU77) [view usage] : a.30.6.1 |ROP-like |HP1531-like |HP1531-like |Hypothetical protein HP1531 |Helicobacter pylori [TaxId: 210]
d1x54a2 : (ASN109) (ARG127) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d4kn9l_ : (ASN363) (VAL399) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfomicrobium baculatum [TaxId: 525897]
d1bjfa_ : (THR144) (CYS185) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Neurocalcin |Cow (Bos taurus) [TaxId: 9913]
d1o1ra_ : (LEU284) (LEU302) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1eiya1 : (ILE9) (GLU84) [view usage] : a.2.7.2 |Long alpha-hairpin |tRNA-binding arm |Phenylalanyl-tRNA synthetase (PheRS) |Phenylalanyl-tRNA synthetase (PheRS) |Thermus thermophilus [TaxId: 274]
d1zkec_ : (PHE2) (LEU77) [view usage] : a.30.6.1 |ROP-like |HP1531-like |HP1531-like |Hypothetical protein HP1531 |Helicobacter pylori [TaxId: 210]
d1ikua_ : (THR147) (ILE186) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Recoverin |Cow (Bos taurus) [TaxId: 9913]
d2nxpe_ : (TYR275) (PHE300) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |TAF5 subunit of TFIID |Human (Homo sapiens) [TaxId: 9606]
d2vsga_ : (ASP227) (GLN252) [view usage] : h.4.1.1 |Antiparallel coiled-coil |Variant surface glycoprotein (N-terminal domain) |Variant surface glycoprotein (N-terminal domain) |Variant surface glycoprotein (N-terminal domain) |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2bzhb_ : (ARG221) (ALA272) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zked_ : (HIS0) (LEU77) [view usage] : a.30.6.1 |ROP-like |HP1531-like |HP1531-like |Hypothetical protein HP1531 |Helicobacter pylori [TaxId: 210]
d2x9ry_ : (LEU6) (MET76) [view usage] : e.38.1.0 |Release factor |Release factor |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1w07b1 : (PRO273) (LEU334) [view usage] : a.29.3.2 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |acyl-CoA oxidase C-terminal domains |Acyl-coenzyme A oxidase 1, domains 3 and 4 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1d8da_ : (LEU284) (LEU302) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2heta_ : (THR147) (LEU185) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Recoverin |Cow (Bos taurus) [TaxId: 9913]
d1yxsa_ : (ARG221) (LEU271) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Proto-oncogene serine/threonine-protein kinase Pim-1 |Human (Homo sapiens) [TaxId: 9606]
d1s4va_ : (GLU51) (ALA105) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Vignain (bean endopeptidase) |Castor bean (Ricinus communis) [TaxId: 3988]
d3dtua_ : (LYS378) (PHE420) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Rhodobacter sphaeroides [TaxId: 1063]
d1r64a2 : (LEU122) (ASN163) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Kexin, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4ogqb_ : (PRO105) (ALA147) [view usage] : f.32.1.1 |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |automated matches |Nostoc sp. [TaxId: 103690]
d1zrla1 : (LEU174) (LYS244) [view usage] : a.264.1.1 |Duffy binding domain-like |Duffy binding domain-like |Duffy binding domain |Erythrocyte binding antigen region II |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1kxla_ : (SER157) (ARG187) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |CDC13 ssDNA-binding domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3f1ex_ : (ASN17) (LEU88) [view usage] : e.38.1.0 |Release factor |Release factor |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
d2rdza_ : (LYS368) (GLY424) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Escherichia coli [TaxId: 562]
d1na3a_ : (TYR54) (LYS84) [view usage] : k.38.1.1 |TPR domain-based design |TPR domain-based design |TPR domain-based design |Designed protein cTPR2 |Synthetic
d2kzga_ : (LYS14) (LYS54) [view usage] : a.159.2.1 |Another 3-helical bundle |FF domain |FF domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4maoa_ : (PRO587) (HIS661) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3ij6a_ : (ALA14) (LYS37) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Lactobacillus acidophilus [TaxId: 1579]
d1v9db_ : (ASP836) (GLN880) [view usage] : a.207.1.1 |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Diaphanous protein homolog 1, dia1 |Mouse (Mus musculus) [TaxId: 10090]
d1zkeb_ : (HIS0) (LEU77) [view usage] : a.30.6.1 |ROP-like |HP1531-like |HP1531-like |Hypothetical protein HP1531 |Helicobacter pylori [TaxId: 210]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.6, a.118, e.18, d.144, b.40, d.104, d.2, c.95, b.121, d.3, c.41, f.24, k.38, a.39, a.138, a.29, a.116, h.4, e.38,
d.24, a.2, a.264, d.379, a.159, a.30, a.213, a.207, f.32