Tableau information
Concept source: d3ld6b_ amino acid (a.a.) range (THR297)(ASP359)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR297) (ASP330) H1
(LYS331) (GLY346) H2
(THR353) (ASP359) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -116.9° H2
H3 47.7° 136.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1s7oa_ : (ASN10) (PHE48) [view usage] : a.4.13.3 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |YlxM/p13-like |Hypothetical protein SPy1201 |Streptococcus pyogenes [TaxId: 1314]
d1m83a_ : (ASP231) (TYR260) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
d1i6ma_ : (ASP231) (TYR260) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
d1l3pa_ : (THR202) (SER250) [view usage] : a.24.17.1 |Four-helical up-and-down bundle |Group V grass pollen allergen |Group V grass pollen allergen |Functional domain of pollen allergen Phl P 5b |Timothy grass (Phleum pratense) [TaxId: 15957]
d2cb5a_ : (SER8) (LEU41) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Human (Homo sapiens) [TaxId: 9606]
d1hija_ : (THR6) (HIS59) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Interleukin-4 (IL-4) |Human (Homo sapiens) [TaxId: 9606]
d1cb5a_ : (SER8) (LEU41) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Human (Homo sapiens) [TaxId: 9606]
d1s7oc_ : (ASN10) (PHE48) [view usage] : a.4.13.3 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |YlxM/p13-like |Hypothetical protein SPy1201 |Streptococcus pyogenes [TaxId: 1314]
d2ccqa1 : (ASN58) (ARG109) [view usage] : d.314.1.1 |PUG domain-like |PUG domain-like |PUG domain |N-glycanase 1, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1jd3a_ : (PRO95) (THR120) [view usage] : d.190.1.1 |Chorismate lyase-like |Chorismate lyase-like |Chorismate lyase |Chorismate lyase |Escherichia coli [TaxId: 562]
d2b90a_ : (THR6) (ASP62) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b91a_ : (THR6) (GLU60) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3rqzc_ : (ASP73) (LEU101) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Sphaerobacter thermophilus [TaxId: 479434]
d1i6ka_ : (ASP231) (TYR260) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Bacillus stearothermophilus [TaxId: 1422]
d3k96a2 : (GLY283) (LEU325) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
d2ixma1 : (PHE268) (LYS302) [view usage] : a.268.1.1 |PTPA-like |PTPA-like |PTPA-like |Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA |Human (Homo sapiens) [TaxId: 9606]
d4k8za2 : (ARG709) (ARG756) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Thermococcus kodakarensis [TaxId: 69014]
d1w63q_ : (GLU100) (PRO148) [view usage] : i.23.1.1 |clathrin assemblies |clathrin assemblies |clathrin assemblies |AP1 clathrin adaptor core |Mouse (Mus musculus) [TaxId: 10090]
d2fokb2 : (ALA146) (LEU184) [view usage] : a.4.5.12 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Flavobacterium okeanokoites [TaxId: 244]
d1crla_ : (ASN451) (GLY484) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Fungus (Candida rugosa), formerly Cylindracea [TaxId: 5481]
d4fm4b_ : (GLU59) (LEU95) [view usage] : b.34.4.0 |SH3-like barrel |Electron transport accessory proteins |automated matches |automated matches |Comamonas testosteroni [TaxId: 285]
d1s7ob_ : (THR9) (PHE48) [view usage] : a.4.13.3 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |YlxM/p13-like |Hypothetical protein SPy1201 |Streptococcus pyogenes [TaxId: 1314]
d2cfob2 : (ASP388) (ALA432) [view usage] : a.97.1.0 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Synechococcus elongatus [TaxId: 32046]
d3kbab_ : (GLU786) (ASN828) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Progesterone receptor |Human (Homo sapiens) [TaxId: 9606]
d2hpja_ : (ASN58) (SER110) [view usage] : d.314.1.1 |PUG domain-like |PUG domain-like |PUG domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2cfoa2 : (ASP388) (ALA433) [view usage] : a.97.1.0 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Synechococcus elongatus [TaxId: 32046]
d3f46a2 : (ALA243) (GLY301) [view usage] : a.100.1.11 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |HMD dimerization domain-like |5,10-methenyltetrahydromethanopterin hydrogenase, HMD |Methanocaldococcus jannaschii [TaxId: 2190]
d1z82a2 : (GLU269) (ARG313) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2nzwc_ : (VAL269) (THR299) [view usage] : c.87.1.11 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |FucT-like |Alpha1,3-fucosyltransferase FucT |Helicobacter pylori [TaxId: 210]
d3jusa_ : (SER132) (SER161) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2jkri_ : (GLU100) (LEU141) [view usage] : d.110.4.2 |Profilin-like |SNARE-like |Clathrin coat assembly domain |Sigma2 adaptin (clathrin coat assembly protein AP17) |Mouse (Mus musculus) [TaxId: 10090]
d4rjza_ : (ASP218) (GLY255) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d1z11a_ : (GLU304) (LYS348) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1t11a1 : (VAL326) (THR376) [view usage] : a.223.1.1 |Triger factor/SurA peptide-binding domain-like |Triger factor/SurA peptide-binding domain-like |TF C-terminus |Trigger factor, C-terminal domain |Vibrio cholerae [TaxId: 666]
d4n0fd3 : (HIS464) (ALA490) [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d6gpba_ : (VAL389) (ARG427) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1sedb_ : (ASP5) (GLY64) [view usage] : a.219.1.1 |Hypothetical protein YhaI |Hypothetical protein YhaI |Hypothetical protein YhaI |Hypothetical protein YhaI |Bacillus subtilis [TaxId: 1423]
d3srza_ : (SER331) (PHE359) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d3q4ta_ : (ARG442) (MET482) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b3ta_ : (LEU40) (THR72) [view usage] : c.66.1.30 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N5-glutamine methyltransferase, HemK |N5-glutamine methyltransferase, HemK |Escherichia coli [TaxId: 562]
d4jjfa2 : (ALA245) (GLY303) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Methanothermobacter marburgensis [TaxId: 79929]
d2qlua_ : (LYS441) (SER484) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ohcd_ : (TRP185) (ALA219) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1z3ix1 : (GLU642) (PHE673) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Rad54-like, Rad54L |Zebrafish (Danio rerio) [TaxId: 7955]
d4f9kb_ : (LYS16) (SER73) [view usage] : a.31.1.0 |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2huma_ : (SER136) (LEU164) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d2amva_ : (VAL389) (MET428) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d4csja_ : (ASN630) (SER673) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3soca_ : (ARG442) (LEU485) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3l2fp1 : (VAL10) (PHE31) [view usage] : a.83.1.0 |Guanido kinase N-terminal domain |Guanido kinase N-terminal domain |automated matches |automated matches |Namalycastis sp. [TaxId: 243920]
d2cm0a1 : (ASN58) (ARG109) [view usage] : d.314.1.1 |PUG domain-like |PUG domain-like |PUG domain |N-glycanase 1, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d5eata1 : (ASP166) (ILE214) [view usage] : a.102.4.1 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Terpenoid cyclase N-terminal domain |5-Epi-aristolochene synthase |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d1mtza_ : (LYS151) (ARG201) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
d3a2fa2 : (PRO710) (ARG757) [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d4p6zs_ : (GLU100) (SER147) [view usage] : d.110.4.0 |Profilin-like |SNARE-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n1ea1 : (GLU300) (LEU343) [view usage] : a.100.1.6 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Glycerol-3-phosphate dehydrogenase |Glycerol-3-phosphate dehydrogenase |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d4fasa_ : (THR168) (HIS204) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Nitrosomonas europaea [TaxId: 228410]
d1gcba_ : (ILE7) (LEU40) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
d3om8a_ : (ALA132) (ALA167) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1z10b_ : (GLU304) (LYS348) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z82b2 : (GLU269) (ARG314) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1xbla_ : (LYS41) (GLU75) [view usage] : a.2.3.1 |Long alpha-hairpin |Chaperone J-domain |Chaperone J-domain |DnaJ chaperone, N-terminal (J) domain |Escherichia coli [TaxId: 562]
d3obva_ : (GLY382) (HIS435) [view usage] : a.118.1.23 |alpha-alpha superhelix |ARM repeat |Diap1 N-terninal region-like |Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.69, c.94, a.104, d.159, a.118, c.68, c.26, a.102, c.66, d.144, c.37, d.2, d.3, c.87, a.123, d.110, a.126, c.61, i.23,
a.100, b.34, a.4, a.138, a.83, a.24, a.26, a.2, a.97, a.268, a.219, d.314, a.31, d.190, a.223