Tableau information
Concept source: d3qvmb_ amino acid (a.a.) range (LEU168)(THR204)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU168) (GLY174) H1
(SER178) (CYS190) H2
(ASP193) (THR204) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 128.3° H2
H3 50.9° 108.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fy7a_ : (THR369) (ALA418) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Histone acetyltransferase ESA1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4hrya_ : (PHE157) (SER196) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2a07g_ : (THR508) (LEU558) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a07f1 : (THR508) (LEU558) [view usage] : a.4.5.14 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Forkhead DNA-binding domain |Forkhead box protein P2, FOXP2 |Human (Homo sapiens) [TaxId: 9606]
d3hoaa_ : (VAL417) (GLY458) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
d2ahjd_ : (PRO64) (ALA99) [view usage] : b.34.4.4 |SH3-like barrel |Electron transport accessory proteins |Nitrile hydratase beta chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d1bdxa2 : (LYS66) (GLU105) [view usage] : a.60.2.1 |SAM domain-like |RuvA domain 2-like |DNA helicase RuvA subunit, middle domain |DNA helicase RuvA subunit, middle domain |Escherichia coli [TaxId: 562]
d3umba_ : (SER20) (TYR61) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Ralstonia solanacearum [TaxId: 305]
d1vdda_ : (SER6) (ASP53) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Deinococcus radiodurans [TaxId: 1299]
d2vk9a1 : (TYR330) (ILE357) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Alpha-toxin |Clostridium novyi [TaxId: 1542]
d1qx5r_ : (GLU82) (ALA128) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3bema_ : (GLN89) (GLY150) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1fz7f_ : (LYS119) (GLY160) [view usage] : a.23.3.1 |Open three-helical up-and-down bundle |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methane monooxygenase hydrolase, gamma subunit |Methylococcus capsulatus [TaxId: 414]
d2z37a_ : (THR175) (GLY228) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Brassica juncea [TaxId: 3707]
d1c1db1 : (VAL296) (ARG346) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Phenylalanine dehydrogenase |Rhodococcus sp., M4 [TaxId: 1831]
d2ioga_ : (THR465) (ALA546) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Estrogen receptor alpha |Human (Homo sapiens) [TaxId: 9606]
d2zxya_ : (GLY3) (GLY47) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d1icva_ : (ASP100) (GLY158) [view usage] : d.90.1.1 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |NADH oxidase/flavin reductase |Oxygen-insensitive NAD(P)H nitroreductase |Escherichia coli, minor form, NfnB [TaxId: 562]
d2aeha1 : (PRO208) (TYR251) [view usage] : a.11.2.1 |Acyl-CoA binding protein-like |Second domain of FERM |Second domain of FERM |Focal adhesion kinase 1 |Chicken (Gallus gallus) [TaxId: 9031]
d3r3ja2 : (ALA436) (GLU506) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d2vkdb_ : (SER332) (PHE360) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |automated matches |Clostridium sordellii [TaxId: 1505]
d4ewgb1 : (ARG64) (GLY99) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d1gtma1 : (GLY346) (GLY415) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Pyrococcus furiosus [TaxId: 2261]
d4ohcb_ : (THR184) (GLY221) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1bgva1 : (ALA374) (GLY446) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Clostridium symbiosum [TaxId: 1512]
d1bw9b1 : (VAL696) (ARG746) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Phenylalanine dehydrogenase |Rhodococcus sp., M4 [TaxId: 1831]
d1odda_ : (SER181) (GLN223) [view usage] : a.4.6.1 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |PhoB-like |OmpR |Escherichia coli [TaxId: 562]
d1b26a1 : (ALA342) (GLY412) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Thermotoga maritima [TaxId: 2336]
d2ahjb_ : (PRO64) (ALA99) [view usage] : b.34.4.4 |SH3-like barrel |Electron transport accessory proteins |Nitrile hydratase beta chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d2z39a_ : (THR175) (GLY228) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Brassica juncea [TaxId: 3707]
d3fwba_ : (GLY11) (GLY53) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4j7aa_ : (PRO245) (ASN276) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Uncultured bacterium [TaxId: 77133]
d1bola_ : (ASP117) (GLY175) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh |Rhizopus niveus [TaxId: 4844]
d1oj6d_ : (GLU35) (GLU86) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Neuroglobin |Human (Homo sapiens) [TaxId: 9606]
d1k0ta_ : (CYS50) (TYR80) [view usage] : d.58.1.2 |Ferredoxin-like |4Fe-4S ferredoxins |7-Fe ferredoxin |Photosystem I iron-sulfur protein PsaC |Synechococcus sp. pcc 7002 [TaxId: 32049]
d3a8mb_ : (PRO64) (ALA99) [view usage] : b.34.4.4 |SH3-like barrel |Electron transport accessory proteins |Nitrile hydratase beta chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d2a07i_ : (THR508) (LEU558) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mj2a_ : (THR52) (GLY96) [view usage] : a.43.1.5 |Ribbon-helix-helix |Ribbon-helix-helix |Met repressor, MetJ (MetR) |Met repressor, MetJ (MetR) |Escherichia coli [TaxId: 562]
d1bxga1 : (VAL296) (ALA348) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Phenylalanine dehydrogenase |Rhodococcus sp., M4 [TaxId: 1831]
d4a17b_ : (ASP111) (LYS151) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2lm1a_ : (TRP281) (VAL319) [view usage] : a.4.3.0 |DNA/RNA-binding 3-helical bundle |ARID-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3qvmb_ : (LEU168) (THR204) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d2fefc2 : (ARG202) (THR244) [view usage] : a.254.1.1 |PA2201 C-terminal domain-like |PA2201 C-terminal domain-like |PA2201 C-terminal domain-like |Hypothetical protein PA2201 |Pseudomonas aeruginosa [TaxId: 287]
d1scza_ : (ASP374) (ASP403) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Dihydrolipoamide succinyltransferase |Escherichia coli [TaxId: 562]
d1q16b_ : (HIS462) (GLY481) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Respiratory nitrate reductase 1 beta chain |Escherichia coli [TaxId: 562]
d2z39b_ : (THR175) (GLY228) [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Brassica juncea [TaxId: 3707]
d2xzmt_ : (ILE76) (ALA154) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1v9la1 : (GLY349) (GLY419) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Pyrobaculum islandicum [TaxId: 2277]
d4g78a_ : (ASP2) (ASP50) [view usage] : a.24.10.0 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.2, d.58, i.1, c.68, c.108, d.92, d.2, c.95, a.123, d.108, c.43, d.124, c.61, a.1, b.34, a.4, d.90, a.39, a.3,
a.23, a.24, e.49, a.11, a.60, a.254, a.43