Tableau information
Concept source: d1lz2a_ amino acid (a.a.) range (ARG5)(PHE34)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG5) (GLY16) H1
(GLY16) (GLY22) H2
(LEU25) (PHE34) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 64.9° H2
H3 127.3° 107.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3teoa_ : (CYS91) (TRP135) [view usage] : c.53.2.0 |Resolvase-like |beta-carbonic anhydrase, cab |automated matches |automated matches |Acidianus sp. [TaxId: 1071056]
d2lhha_ : (THR5) (ASP56) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1y9ba1 : (ASP13) (GLU83) [view usage] : a.43.1.9 |Ribbon-helix-helix |Ribbon-helix-helix |VCA0319-like |Hypothetical protein VCA0482 (VCA0319) |Vibrio cholerae [TaxId: 666]
d4f9ka_ : (CYS18) (GLN69) [view usage] : a.31.1.0 |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kjza_ : (SER156) (VAL188) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1ef1c_ : (THR539) (MSE577) [view usage] : a.137.5.1 |Non-globular all-alpha subunits of globular proteins |Moesin tail domain |Moesin tail domain |Moesin tail domain |Human (Homo sapiens) [TaxId: 9606]
d1crxa2 : (PHE265) (GLY313) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1g8ka2 : (GLY622) (LEU643) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d1vytb2 : (ASP220) (SER241) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Guanylate kinase-like domain of the L-type calcium channel |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1noja_ : (GLY20) (GLU76) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3st6a_ : (ASP348) (TYR385) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d2j0nb_ : (ASN193) (LEU230) [view usage] : a.250.1.1 |IpaD-like |IpaD-like |IpaD-like |Invasin IpaD |Shigella flexneri [TaxId: 623]
d2fxac_ : (VAL10) (LYS68) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Protease production regulatory protein Hpr |Bacillus subtilis [TaxId: 1423]
d2b0og1 : (PRO488) (HIS538) [view usage] : g.45.1.0 |ArfGap/RecO-like zinc finger |ArfGap/RecO-like zinc finger |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g8ja2 : (GLY622) (LEU643) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d1ug3b1 : (PRO1390) (LYS1422) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |Eukaryotic initiation factor eIF4G |Human (Homo sapiens) [TaxId: 9606]
d4c2oa_ : (ALA189) (HIS258) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3hsrb_ : (GLY3) (VAL62) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 426430]
d2pt1a_ : (ASN152) (ASP169) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1iooa_ : (GLY57) (ARG98) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Gemetophytic self-incompatibility associated SF11-RNase |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d4egmb_ : (SER117) (VAL159) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d1bf6a_ : (LEU250) (PHE290) [view usage] : c.1.9.3 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Phosphotriesterase-like |Phosphotriesterase homology protein |Escherichia coli [TaxId: 562]
d2c8jb_ : (TRP146) (LYS174) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |automated matches |Bacillus anthracis [TaxId: 198094]
d5r1ra1 : (GLU125) (TYR155) [view usage] : a.98.1.1 |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |Escherichia coli [TaxId: 562]
d2pt2a_ : (ASN152) (ASP169) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Synechocystis sp. PCC 6803 [TaxId: 1148]
d2b0oh1 : (GLY487) (HIS538) [view usage] : g.45.1.0 |ArfGap/RecO-like zinc finger |ArfGap/RecO-like zinc finger |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fr0a_ : (SER659) (MET692) [view usage] : a.24.10.1 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Aerobic respiration control sensor protein, ArcB |Aerobic respiration control sensor protein, ArcB |Escherichia coli [TaxId: 562]
d1brta_ : (ASN173) (TYR206) [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |Bromoperoxidase A2 |Streptomyces aureofaciens [TaxId: 1894]
d1ufna_ : (THR51) (GLY85) [view usage] : d.217.1.1 |SAND domain-like |SAND domain-like |SAND domain |Putative nuclear protein homolog 5830484a20rik |Mouse (Mus musculus) [TaxId: 10090]
d3exec_ : (PRO268) (ALA326) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d1be3c3 : (ILE153) (GLY204) [view usage] : f.21.1.2 |Heme-binding four-helical bundle |Transmembrane di-heme cytochromes |Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Mitochondrial cytochrome b subunit, N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d1vgaa_ : (LYS138) (ILE161) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d5crxb2 : (SER257) (GLY313) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1ejli_ : (ALA195) (ALA222) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
d4o8ma_ : (LEU295) (GLN327) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d1s66l_ : (PRO47) (GLY87) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Direct oxygen sensor protein, DOS |Escherichia coli [TaxId: 562]
d1ug3a1 : (PRO1390) (LYS1422) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |Eukaryotic initiation factor eIF4G |Human (Homo sapiens) [TaxId: 9606]
d3logb_ : (ASP348) (TYR385) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d4f9kd_ : (CYS18) (ARG68) [view usage] : a.31.1.0 |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3wyha_ : (SER17) (LEU59) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |automated matches |Struthio camelus [TaxId: 8801]
d4fgld_ : (PRO109) (LYS140) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |Quinone reductase type 2 (menadione reductase) |Human (Homo sapiens) [TaxId: 9606]
d1f0lb3 : (SER261) (ASN296) [view usage] : f.1.2.1 |Toxins' membrane translocation domains |Diphtheria toxin, middle domain |Diphtheria toxin, middle domain |Diphtheria toxin, middle domain |Corynebacterium diphtheriae [TaxId: 1717]
d1g8jc2 : (GLY622) (LEU643) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d1iunb_ : (ARG174) (ALA203) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |Meta-cleavage product hydrolase CumD |Pseudomonas fluorescens [TaxId: 294]
d2o34b_ : (GLN66) (PHE116) [view usage] : d.96.2.2 |T-fold |ApbE-like |DVU1097-like |automated matches |Desulfovibrio vulgaris [TaxId: 881]
d4elzb_ : (MET362) (ARG413) [view usage] : e.11.1.1 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |Vibrio fischeri [TaxId: 312309]
d2hwva_ : (THR177) (VAL219) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
d1ay2a_ : (LYS44) (LYS74) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |Pilin Gc |Neisseria gonorrhoeae [TaxId: 485]
d4p6sa_ : (ASN261) (GLY283) [view usage] : a.86.1.0 |Di-copper centre-containing domain |Di-copper centre-containing domain |automated matches |automated matches |Bacillus megaterium [TaxId: 1404]
d1ufba_ : (TYR91) (LEU127) [view usage] : a.24.16.3 |Four-helical up-and-down bundle |Nucleotidyltransferase substrate binding subunit/domain |HEPN domain |Hypothetical protein TT1696 |Thermus thermophilus [TaxId: 274]
d1oqja_ : (SER129) (SER162) [view usage] : d.217.1.1 |SAND domain-like |SAND domain-like |SAND domain |Glucocorticoid modulatory element binding protein-1 (Gmeb1) |Human (Homo sapiens) [TaxId: 9606]
d3brod_ : (THR94) (SER137) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Transcriptional regulator OEOE1854 |Oenococcus oeni [TaxId: 1247]
d2b0oe1 : (GLY487) (HIS538) [view usage] : g.45.1.0 |ArfGap/RecO-like zinc finger |ArfGap/RecO-like zinc finger |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3tcnb_ : (THR155) (ARG187) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1lz2a_ : (ARG5) (PHE34) [view usage] : d.2.1.2 |Lysozyme-like |Lysozyme-like |C-type lysozyme |Lysozyme |Turkey (Meleagris gallopavo) [TaxId: 9103]
d1xbla_ : (ASP5) (LYS41) [view usage] : a.2.3.1 |Long alpha-hairpin |Chaperone J-domain |Chaperone J-domain |DnaJ chaperone, N-terminal (J) domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.81, c.94, a.104, a.118, c.56, c.92, d.92, c.23, c.37, c.36, d.2, a.86, c.87, d.96, e.11, d.110, c.53, d.124,
f.21, a.4, a.39, f.1, a.24, d.24, a.2, a.98, d.161, d.163, g.45, a.31, a.43, a.250, d.217, a.137