Tableau information
Concept source: d1re5d_ amino acid (a.a.) range (VAL298)(MET348)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL298) (MET309) H1
(GLY318) (TRP324) H2
(THR326) (MET348) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -150.9° H2
H3 -148.9° 28.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2zyaa2 : (PRO391) (ALA433) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3gwkc_ : (THR8) (SER93) [view usage] : a.25.3.0 |Ferritin-like |EsxAB dimer-like |automated matches |automated matches |Streptococcus agalactiae [TaxId: 208435]
d1hy1c_ : (PRO290) (LEU353) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d4iyhb_ : (PRO8) (ARG84) [view usage] : a.25.3.0 |Ferritin-like |EsxAB dimer-like |automated matches |automated matches |Bacillus anthracis [TaxId: 260799]
d1xwod_ : (LEU293) (LEU353) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Anser anser [TaxId: 8844]
d2ewra1 : (LEU130) (LYS157) [view usage] : d.218.1.11 |Nucleotidyltransferase |Nucleotidyltransferase |TM1012-like |Hypothetical protein TM1012 |Thermotoga maritima [TaxId: 2336]
d3n90a_ : (ARG195) (LEU225) [view usage] : b.80.8.0 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1tjva_ : (ASP293) (LEU355) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d1jgja_ : (VAL2) (GLY57) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1blxb_ : (CYS7) (GLY64) [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |Cell cycle inhibitor p19ink4D |Mouse (Mus musculus) [TaxId: 10090]
d1wdka2 : (GLY679) (GLY710) [view usage] : a.100.1.3 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |HCDH C-domain-like |Fatty oxidation complex alpha subunit, C-terminal domain |Pseudomonas fragi [TaxId: 296]
d1k9oi_ : (SER46) (VAL92) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Alaserpin (serpin 1) |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
d1k7wb_ : (ASP293) (THR354) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d3hoaa_ : (PRO3) (VAL70) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
d1lkia_ : (THR75) (PHE180) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |Leukemia inhibitory factor (LIF) |Mouse (Mus musculus) [TaxId: 10090]
d1bd8a_ : (ARG7) (GLY64) [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |Cell cycle inhibitor p19ink4D |Human (Homo sapiens) [TaxId: 9606]
d3ofta_ : (PHE84) (LEU105) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 279238]
d1tjua_ : (ASP293) (THR354) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d3qoma_ : (GLU180) (ASN233) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Lactobacillus plantarum [TaxId: 1590]
d4avma_ : (PHE43) (ALA162) [view usage] : a.238.1.0 |BAR/IMD domain-like |BAR/IMD domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k7wc_ : (ASP293) (LEU355) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d3sf6a2 : (ALA301) (GLY354) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2p0ma1 : (PRO337) (GLY407) [view usage] : a.119.1.2 |Lipoxigenase |Lipoxigenase |Animal lipoxigenases |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1j78a3 : (THR418) (ASN456) [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Vitamin D binding protein |Human (Homo sapiens) [TaxId: 9606]
d1ifqb_ : (HIS99) (ILE127) [view usage] : d.110.4.1 |Profilin-like |SNARE-like |Synatpobrevin N-terminal domain |Sec22b |Mouse (Mus musculus) [TaxId: 10090]
d1nf6o_ : (ARG5) (GLU93) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Bacterioferritin (cytochrome b1) |Desulfovibrio desulfuricans [TaxId: 876]
d4ms0b_ : (ALA734) (GLY768) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3obqa_ : (LEU111) (GLU138) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d4gphc_ : (TRP650) (ASN678) [view usage] : a.132.1.1 |Heme oxygenase-like |Heme oxygenase-like |Eukaryotic type heme oxygenase |Heme oxygenase HmuO |Corynebacterium diphtheriae [TaxId: 1717]
d1oupa_ : (PRO163) (SER199) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |Periplasmic endonuclease Vvn |Vibrio vulnificus [TaxId: 672]
d2ijha_ : (THR2) (GLY57) [view usage] : a.30.1.1 |ROP-like |ROP protein |ROP protein |ROP protein |Escherichia coli [TaxId: 562]
d1u16a_ : (LEU293) (LEU353) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d1syqa2 : (ALA129) (LEU182) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Human (Homo sapiens) [TaxId: 9606]
d1qu7a_ : (GLN297) (GLN519) [view usage] : h.4.5.1 |Antiparallel coiled-coil |Methyl-accepting chemotaxis protein (MCP) signaling domain |Methyl-accepting chemotaxis protein (MCP) signaling domain |Cytoplasmic domain of a serine chemotaxis receptor |Escherichia coli [TaxId: 562]
d2q9zb_ : (PRO144) (PRO197) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d2ghya_ : (LYS3) (ARG55) [view usage] : a.30.1.1 |ROP-like |ROP protein |ROP protein |ROP protein |Escherichia coli [TaxId: 562]
d1jlia_ : (ARG54) (GLN122) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Interleukin-3 (IL-3) |Human (Homo sapiens) [TaxId: 9606]
d1bsha1 : (ASP90) (MET138) [view usage] : a.2.10.1 |Long alpha-hairpin |Epsilon subunit of F1F0-ATP synthase C-terminal domain |Epsilon subunit of F1F0-ATP synthase C-terminal domain |Epsilon subunit of F1F0-ATP synthase C-terminal domain |Escherichia coli [TaxId: 562]
d3a6ja_ : (GLY180) (VAL200) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d2yw7c1 : (VAL17) (LEU75) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Dodecameric ferritin homolog |Mycobacterium smegmatis [TaxId: 1772]
d1cd9c_ : (LEU72) (ALA173) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |Granulocyte-colony stimulating factor (G-CSF) |Human (Homo sapiens) [TaxId: 9606]
d1tjwc_ : (ASP293) (LEU355) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d2d9qa_ : (LEU71) (PRO174) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1eq1a_ : (ASP106) (THR164) [view usage] : a.63.1.1 |Apolipophorin-III |Apolipophorin-III |Apolipophorin-III |Apolipophorin-III |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
d1j36a_ : (LYS26) (GLN84) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme, ACE |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3gm1a_ : (ASP878) (LEU927) [view usage] : a.24.14.0 |Four-helical up-and-down bundle |FAT domain of focal adhesion kinase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3vrcb_ : (SER4) (GLY59) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Thermochromatium tepidum [TaxId: 1050]
d4iyic_ : (PRO8) (ASN85) [view usage] : a.25.3.0 |Ferritin-like |EsxAB dimer-like |automated matches |automated matches |Bacillus anthracis [TaxId: 260799]
d3jzda_ : (LEU264) (GLY305) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 264198]
d1g9ja_ : (GLY413) (ILE449) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Processive endocellulase CelF (Cel48F) |Clostridium cellulolyticum [TaxId: 1521]
d1tjub_ : (ASP293) (THR354) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d1hy1d_ : (SER112) (ASN195) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d1gh6a_ : (MET30) (PHE104) [view usage] : a.2.3.1 |Long alpha-hairpin |Chaperone J-domain |Chaperone J-domain |Large T antigen, the N-terminal J domain |Simian virus 40, Sv40 [TaxId: 10633]
d3odoa1 : (LEU554) (LEU622) [view usage] : a.87.1.0 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n1za2 : (LEU412) (ALA453) [view usage] : a.128.1.3 |Terpenoid synthases |Terpenoid synthases |Terpenoid cyclase C-terminal domain |(+)-bornyl diphosphate synthase |Garden sage (Salvia officinalis) [TaxId: 38868]
d2c1ta_ : (PRO229) (LEU265) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3fx7b_ : (ASP7) (HIS91) [view usage] : a.25.5.1 |Ferritin-like |HP0062-like |HP0062-like |automated matches |Helicobacter pylori [TaxId: 210]
d4i0ua1 : (GLU206) (VAL283) [view usage] : d.328.1.1 |CorA soluble domain-like |CorA soluble domain-like |CorA soluble domain-like |automated matches |Thermotoga maritima [TaxId: 243274]
d4iyia_ : (PRO8) (ARG84) [view usage] : a.25.3.0 |Ferritin-like |EsxAB dimer-like |automated matches |automated matches |Bacillus anthracis [TaxId: 260799]
d3m02a2 : (ARG358) (THR403) [view usage] : a.128.1.3 |Terpenoid synthases |Terpenoid synthases |Terpenoid cyclase C-terminal domain |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d1tjwb_ : (ASP293) (THR354) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
d1ld7b_ : (VAL701) (ARG731) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Human (Homo sapiens) [TaxId: 9606]
d3v98a2 : (ALA343) (GLU412) [view usage] : a.119.1.0 |Lipoxigenase |Lipoxigenase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fppb_ : (VAL201) (CYS232) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4iv6a1 : (GLY87) (GLY114) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4iv6b1 : (GLY87) (GLY114) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d3vrca_ : (SER4) (GLY59) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Thermochromatium tepidum [TaxId: 1050]
d1n7ra1 : (ASP366) (THR426) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |Hyaluronate lyase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2ficb_ : (GLU52) (ASP137) [view usage] : a.238.1.0 |BAR/IMD domain-like |BAR/IMD domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n00a_ : (SER137) (SER160) [view usage] : a.65.1.1 |Annexin |Annexin |Annexin |Annexin GH1 |Cotton (Gossypium hirsutum) [TaxId: 3635]
d1cd9a_ : (LEU72) (PRO175) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |Granulocyte-colony stimulating factor (G-CSF) |Human (Homo sapiens) [TaxId: 9606]
d3sjqd_ : (GLN415) (LYS488) [view usage] : f.15.1.1 |Small-conductance potassium channel |Small-conductance potassium channel |Small-conductance potassium channel |Small-conductance potassium channel |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1auea_ : (TRP2024) (GLY2062) [view usage] : a.24.7.1 |Four-helical up-and-down bundle |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |Human (Homo sapiens) [TaxId: 9606]
d3o8yb2 : (ALA343) (GLU412) [view usage] : a.119.1.0 |Lipoxigenase |Lipoxigenase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2if4a2 : (VAL172) (LEU217) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2b3xa2 : (PRO36) (TRP66) [view usage] : c.83.1.1 |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Aconitase iron-sulfur domain |Iron-responsive element binding protein 1, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2b8za_ : (THR40) (SER128) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fi2b_ : (GLY39) (SER79) [view usage] : a.28.3.2 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |SCAN domain |Zinc finger protein 42 |Human (Homo sapiens) [TaxId: 9606]
d1hxga2 : (GLY357) (THR403) [view usage] : a.128.1.3 |Terpenoid synthases |Terpenoid synthases |Terpenoid cyclase C-terminal domain |5-Epi-aristolochene synthase |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d4iyhc_ : (PRO8) (ASN85) [view usage] : a.25.3.0 |Ferritin-like |EsxAB dimer-like |automated matches |automated matches |Bacillus anthracis [TaxId: 260799]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, a.119, a.104, a.118, a.128, a.102, d.92, a.65, a.127, a.211, e.22, e.6, a.132, d.20, d.110, a.126, d.211, a.25, d.328,
e.1, a.100, f.13, c.125, a.29, d.218, a.87, a.24, a.26, d.4, h.4, c.83, a.28, a.2, a.63, a.238, a.30, f.15