Tableau information
Concept source: d1r4ra_ amino acid (a.a.) range (CYS457)(ALA503)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(CYS457) (GLU469) H1
(LYS486) (CYS492) H2
(CYS492) (ALA503) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 11.6° H2
H3 -96.6° -108.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1taca_ : (GLY15) (SER30) [view usage] : j.40.1.1 |Transactivation protein TAT |Transactivation protein TAT |Transactivation protein TAT |Transactivation protein TAT |Human immunodeficiency virus type 1 [TaxId: 11676]
d1by4c_ : (CYS2152) (GLY2199) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Retinoid X receptor (RXR-alpha) DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1r0nb_ : (GLU219) (GLY265) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Ecdysone receptor DNA-binding domain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1cita_ : (CYS249) (GLY296) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Orphan nuclear receptor NGFI-B DNA-binding domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3g6qa_ : (CYS457) (GLY504) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3fyla_ : (GLY458) (ALA503) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1r4ra_ : (CYS457) (ALA503) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Glucocorticoid receptor DNA-binding domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3g8xb_ : (CYS457) (GLY504) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3o3ta2 : (THR174) (ARG216) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ga5e_ : (CYS18) (GLY65) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Orphan nuclear receptor reverb DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1r4rb_ : (CYS457) (GLY504) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Glucocorticoid receptor DNA-binding domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4f10a_ : (ARG312) (VAL336) [view usage] : a.102.3.1 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Alginate lyase A1-III |Alginate lyase A1-III |Sphingomonas sp., A1 [TaxId: 28214]
d1a6yb_ : (CYS118) (GLY165) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Orphan nuclear receptor reverb DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d3cbbb_ : (CYS68) (GLY115) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kb6a_ : (CYS41) (GLY88) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Vitamin D3 receptor, VDR, DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d2nlla_ : (CYS152) (GLY199) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Retinoid X receptor (RXR-alpha) DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1gdca_ : (CYS19) (GLY66) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Glucocorticoid receptor DNA-binding domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1kb6b_ : (CYS241) (GLY288) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Vitamin D3 receptor, VDR, DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1lata_ : (CYS457) (ALA503) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Glucocorticoid receptor DNA-binding domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ga5b_ : (CYS18) (GLY65) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Orphan nuclear receptor reverb DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1dszb_ : (CYS1252) (GLY1299) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Retinoid X receptor (RXR-alpha) DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d4kx4a2 : (GLU170) (THR205) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |automated matches |Escherichia coli [TaxId: 83333]
d4n4ub_ : (ASP89) (LEU102) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 257310]
d1hcqa_ : (CYS24) (GLU69) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Estrogen receptor DNA-binding domain |Human and chicken (Homo sapiens) and (Gallus gallus) [TaxId: 9606]
d2hanb_ : (CYS24) (GLY71) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1esnb_ : (GLU233) (LEU265) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |Pantothenate kinase PanK |Escherichia coli [TaxId: 562]
d1r0ob_ : (CYS24) (GLY71) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Ecdysone receptor DNA-binding domain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1r4oa_ : (CYS457) (ALA503) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Glucocorticoid receptor DNA-binding domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1latb_ : (CYS457) (ALA503) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Glucocorticoid receptor DNA-binding domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ynwa1 : (CYS41) (ILE87) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Vitamin D3 receptor, VDR, DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d4e1ya_ : (GLY313) (VAL336) [view usage] : a.102.3.1 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Alginate lyase A1-III |Alginate lyase A1-III |Sphingomonas sp., A1 [TaxId: 28214]
d1r0na_ : (CYS118) (ALA163) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Retinoid X receptor (RXR-alpha) DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1r4ib_ : (CYS559) (GLY606) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Androgen receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2a66a_ : (CYS103) (GLY150) [view usage] : g.39.1.0 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dsza_ : (CYS1152) (GLY1199) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Retinoic acid receptor DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, a.102, c.37, a.45, j.40, g.39