Tableau information
Concept source: d2biya_ amino acid (a.a.) range (SER262)(LEU316)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER262) (GLY278) H1
(GLU287) (LEU297) H2
(PHE306) (LEU316) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 106.4° H2
H3 -152.1° -93.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fj1a2 : (SER74) (LEU117) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor (Tet-repressor, TetR) |Escherichia coli [TaxId: 562]
d1umxm_ : (SER54) (ALA125) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d4pj0c_ : (PRO364) (HIS398) [view usage] : f.55.1.1 |Photosystem II antenna protein-like |Photosystem II antenna protein-like |Photosystem II antenna protein-like |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d4n21c_ : (GLU229) (GLU351) [view usage] : h.3.2.0 |Stalk segment of viral fusion proteins |Virus ectodomain |automated matches |automated matches |Cas virus [TaxId: 1223561]
d1qovm_ : (SER54) (ALA125) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d2a5yc1 : (PRO330) (LEU385) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |CED-4, NB-ARC domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3cvua2 : (GLU224) (GLY268) [view usage] : a.99.1.0 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2g7ga2 : (ASP77) (GLY126) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Putative transcriptional regulator Rha04620 |Rhodococcus sp. RHA1 [TaxId: 101510]
d1ynjc1 : (LEU195) (LEU242) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus aquaticus [TaxId: 271]
d3g7fm_ : (SER54) (TYR132) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Blastochloris viridis [TaxId: 1079]
d2vk9a1 : (LEU139) (MET195) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Alpha-toxin |Clostridium novyi [TaxId: 1542]
d4g7sa_ : (THR156) (GLY214) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1lw1b_ : (ALA65) (ASN109) [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
d1vw4c_ : (THR25) (LYS83) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d1np7a1 : (GLY215) (GLY259) [view usage] : a.99.1.1 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |Cryptochrome C-terminal domain |Synechocystis sp. PCC 6803 [TaxId: 1148]
d4n21e_ : (ASN230) (HIS350) [view usage] : h.3.2.0 |Stalk segment of viral fusion proteins |Virus ectodomain |automated matches |automated matches |Cas virus [TaxId: 1223561]
d2xrla2 : (SER74) (GLY124) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |automated matches |Escherichia coli [TaxId: 562]
d1mg1a2 : (SER373) (ARG450) [view usage] : h.3.2.1 |Stalk segment of viral fusion proteins |Virus ectodomain |Virus ectodomain |HTLV-1 gp21 |Human T-cell leukemia virus type 1 [TaxId: 11908]
d1vlsa_ : (VAL41) (HIS103) [view usage] : a.24.2.1 |Four-helical up-and-down bundle |Aspartate receptor, ligand-binding domain |Aspartate receptor, ligand-binding domain |Aspartate receptor, ligand-binding domain |Salmonella typhimurium [TaxId: 90371]
d1z8la1 : (ARG598) (PHE653) [view usage] : a.48.2.1 |N-cbl like |Transferrin receptor-like dimerisation domain |Transferrin receptor-like dimerisation domain |Glutamate carboxypeptidase II |Human (Homo sapiens) [TaxId: 9606]
d3o5ta_ : (ASP3) (ILE72) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Azospirillum brasilense [TaxId: 192]
d1mpsm_ : (GLY53) (ALA125) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d3dtsm_ : (SER54) (ALA125) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d3qt3a_ : (TYR159) (LYS251) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |Hypothetical protein CPF0428 |Clostridium perfringens [TaxId: 1502]
d1gnta_ : (PRO24) (ILE70) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio vulgaris [TaxId: 881]
d4m8ua1 : (PHE281) (VAL321) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus subtilis [TaxId: 224308]
d2woea_ : (SER5) (LYS75) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 1085]
d3mvqf2 : (PHE399) (ARG439) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Cow (Bos taurus) [TaxId: 9913]
d4n23b_ : (ASN230) (GLU351) [view usage] : h.3.2.0 |Stalk segment of viral fusion proteins |Virus ectodomain |automated matches |automated matches |Cas virus [TaxId: 1223561]
d3wu2a_ : (PRO196) (ILE259) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Thermosynechococcus vulcanus [TaxId: 32053]
d2woca_ : (SER5) (LYS75) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 1085]
d3g9da_ : (SER5) (LEU73) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Azospirillum brasilense [TaxId: 192]
d2wb2a2 : (GLU224) (GLY268) [view usage] : a.99.1.0 |Cryptochrome/photolyase FAD-binding domain |Cryptochrome/photolyase FAD-binding domain |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, i.1, c.68, a.102, d.144, c.37, f.26, f.24, a.152, h.3, e.26, a.99, a.24, a.209, a.48, a.121, e.29, f.55