Tableau information
Concept source: d1okca_ amino acid (a.a.) range (ALA26)(ARG59)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA26) (GLN36) H1
(SER45) (GLN49) H2
(ILE53) (ARG59) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -130.8° H2
H3 115.6° 111.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4odfa_ : (PRO20) (ARG65) [view usage] : a.42.1.1 |SWIB/MDM2 domain |SWIB/MDM2 domain |SWIB/MDM2 domain |MDM2 |Human (Homo sapiens) [TaxId: 9606]
d2j7ad_ : (GLY186) (GLN231) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d2yvea2 : (PRO77) (TRP120) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Transcriptional regulator Cgl2612 |Corynebacterium glutamicum [TaxId: 1718]
d3n06a_ : (CYS58) (ASN92) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3g21a_ : (PRO199) (GLN226) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |automated matches |Rous sarcoma virus [TaxId: 11888]
d1or6a_ : (SER17) (ASN61) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Heme-based aerotactic transducer HemAT, sensor domain |Bacillus subtilis [TaxId: 1423]
d1izlv_ : (ILE69) (ILE125) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d3tqsa_ : (TRP231) (ASN258) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d2mlxa3 : (LYS279) (GLU359) [view usage] : a.223.1.0 |Triger factor/SurA peptide-binding domain-like |Triger factor/SurA peptide-binding domain-like |automated matches |automated matches |Escherichia coli [TaxId: 1403831]
d1kwga2 : (LEU268) (ARG305) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |A4 beta-galactosidase |Thermus thermophilus [TaxId: 274]
d2vr0e_ : (CYS187) (GLN231) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d2j00b1 : (GLU9) (GLY65) [view usage] : c.23.15.1 |Flavodoxin-like |Ribosomal protein S2 |Ribosomal protein S2 |Ribosomal protein S2 |Thermus thermophilus [TaxId: 274]
d1f7ua3 : (ALA2) (ILE46) [view usage] : d.67.2.1 |RRF/tRNA synthetase additional domain-like |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4fm4b_ : (GLY3) (ARG57) [view usage] : b.34.4.0 |SH3-like barrel |Electron transport accessory proteins |automated matches |automated matches |Comamonas testosteroni [TaxId: 285]
d3m84a2 : (ASP274) (ARG300) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain |Francisella tularensis [TaxId: 177416]
d3g28a_ : (GLN198) (GLN226) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |automated matches |Rous sarcoma virus [TaxId: 11888]
d2j7ak_ : (GLY186) (GLN231) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d4jaxa2 : (TYR269) (THR304) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Kluyveromyces lactis [TaxId: 284590]
d1tued_ : (MET429) (GLY473) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication protein E1 helicase domain |Human papillomavirus type 18 [TaxId: 333761]
d3r9xb_ : (LEU190) (SER246) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d1aama_ : (ASP349) (LEU408) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Aspartate aminotransferase, AAT |Escherichia coli [TaxId: 562]
d3l2fa1 : (LYS26) (LYS52) [view usage] : a.83.1.0 |Guanido kinase N-terminal domain |Guanido kinase N-terminal domain |automated matches |automated matches |Namalycastis sp. [TaxId: 243920]
d1tuef_ : (ASN428) (GLY473) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication protein E1 helicase domain |Human papillomavirus type 18 [TaxId: 333761]
d1n2hb_ : (THR105) (ARG151) [view usage] : c.26.1.4 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Mycobacterium tuberculosis [TaxId: 1773]
d3cgwa_ : (SER44) (GLY106) [view usage] : c.143.1.1 |CofD-like |CofD-like |CofD-like |LPPG:FO 2-phospho-L-lactate transferase CofD |Methanosarcina mazei [TaxId: 2209]
d3v93f_ : (THR306) (ASP340) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d2whwb_ : (ASP73) (ASN91) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d1vs5b1 : (LEU9) (LYS63) [view usage] : c.23.15.1 |Flavodoxin-like |Ribosomal protein S2 |Ribosomal protein S2 |Ribosomal protein S2 |Escherichia coli [TaxId: 562]
d1x0pb_ : (ASP1102) (SER1140) [view usage] : d.58.10.2 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |BLUF domain |Hypothetical protein Tll0078 |Thermosynechococcus elongatus [TaxId: 146786]
d3myrd_ : (SER1144) (ALA1202) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Allochromatium vinosum [TaxId: 1049]
d4cgeb_ : (ASP102) (SER159) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1jmxa2 : (ALA116) (PRO161) [view usage] : a.3.1.7 |Cytochrome c |Cytochrome c |Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 |Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 |Pseudomonas putida [TaxId: 303]
d4emna_ : (TRP285) (ARG346) [view usage] : d.2.1.8 |Lysozyme-like |Lysozyme-like |RPF-like |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3u0oa2 : (GLY260) (LEU296) [view usage] : d.139.1.0 |PurM C-terminal domain-like |PurM C-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1or4a_ : (SER17) (ASN61) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Heme-based aerotactic transducer HemAT, sensor domain |Bacillus subtilis [TaxId: 1423]
d3ftfa_ : (ASP189) (GLU244) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d3rdwb_ : (SER40) (ASN89) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d2ikba1 : (MSE1) (ARG69) [view usage] : d.2.1.9 |Lysozyme-like |Lysozyme-like |NMB1012-like |Hypothetical protein NMB1012 |Neisseria meningitidis [TaxId: 487]
d4emnb_ : (TRP285) (ARG346) [view usage] : d.2.1.8 |Lysozyme-like |Lysozyme-like |RPF-like |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1ufva_ : (GLY89) (VAL135) [view usage] : c.26.1.4 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Thermus thermophilus [TaxId: 274]
d1oz6a_ : (LEU2) (GLY56) [view usage] : a.133.1.2 |Phospholipase A2, PLA2 |Phospholipase A2, PLA2 |Vertebrate phospholipase A2 |Snake phospholipase A2 |Saw-scaled viper (Echis carinatus) [TaxId: 40353]
d3qtta_ : (SER96) (ILE141) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Francisella tularensis [TaxId: 177416]
d3dmba_ : (ASP92) (ASP114) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
d1b82a_ : (THR104) (VAL178) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Fungal peroxidase (ligninase) |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d3l2eb1 : (LYS26) (TYR53) [view usage] : a.83.1.0 |Guanido kinase N-terminal domain |Guanido kinase N-terminal domain |automated matches |automated matches |Namalycastis sp. [TaxId: 243920]
d2yyea2 : (TYR250) (SER290) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Selenide, water dikinase SelD |Aquifex aeolicus [TaxId: 63363]
d3u5ct_ : (ALA10) (ARG68) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d4ogna_ : (PRO20) (ARG65) [view usage] : a.42.1.1 |SWIB/MDM2 domain |SWIB/MDM2 domain |SWIB/MDM2 domain |MDM2 |Human (Homo sapiens) [TaxId: 9606]
d2fhqb_ : (ASP89) (VAL115) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d3rdwa_ : (SER40) (ASN89) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d2xzmt_ : (ALA14) (PRO72) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1o8ra_ : (LYS17) (ASP79) [view usage] : d.234.1.1 |Proguanylin |Proguanylin |Proguanylin |Proguanylin |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, a.104, d.58, i.1, c.26, c.66, a.93, a.211, e.18, c.23, c.37, c.47, c.55, d.2, i.5, b.45, a.1, b.34, d.67,
d.139, a.138, a.3, a.83, a.133, a.42, a.26, a.28, f.42, a.121, c.143, a.223, d.234