Tableau information
Concept source: d2x42a1 amino acid (a.a.) range (ASP274)(ASN312)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP274) (GLU285) H1
(GLU290) (ALA307) H2
(ALA307) (ASN312) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -135.7° H2
H3 -89.1° -78.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4mhib_ : (ASP145) (ILE173) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
d1soua_ : (LYS3) (SER42) [view usage] : c.124.1.6 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |Methenyltetrahydrofolate synthetase |Hypothetical protein aq_1731 |Aquifex aeolicus [TaxId: 63363]
d2oipc2 : (ASP187) (LYS217) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Cryptosporidium hominis [TaxId: 237895]
d2dfsc1 : (GLU54) (GLU84) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Mouse (Mus musculus) [TaxId:10090]
d3irta_ : (THR121) (GLY150) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w07a2 : (LEU515) (ASN575) [view usage] : a.29.3.2 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |acyl-CoA oxidase C-terminal domains |Acyl-coenzyme A oxidase 1, domains 3 and 4 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2x42a1 : (ASP274) (ASN312) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-glucosidase |Thermotoga neapolitana [TaxId: 309803]
d1khoa1 : (THR133) (LYS163) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium perfringens, different strains [TaxId: 1502]
d1nzya_ : (ALA219) (GLY255) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |4-Chlorobenzoyl-CoA dehalogenase |Pseudomonas sp., strain CBS-3 [TaxId: 306]
d4d2ob_ : (SER182) (LEU225) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Citrobacter freundii [TaxId: 546]
d1eoma_ : (TYR43) (PHE62) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Endo-beta-N-acetylglucosaminidase |Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]
d2be3a1 : (ALA151) (PHE201) [view usage] : d.218.1.8 |Nucleotidyltransferase |Nucleotidyltransferase |RelA/SpoT domain |Putative GTP pyrophosphokinase SP1097 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1olpd1 : (THR133) (ARG163) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium absonum [TaxId: 29369]
d4d8fa_ : (ILE195) (THR250) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Chlamydia trachomatis [TaxId: 813]
d1e25a_ : (SER182) (LEU225) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Pseudomonas aeruginosa, PER-1 [TaxId: 287]
d2fokb2 : (PRO196) (GLY238) [view usage] : a.4.5.12 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Flavobacterium okeanokoites [TaxId: 244]
d1qz7a_ : (LEU408) (GLY442) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |beta-Catenin |Human (Homo sapiens) [TaxId: 9606]
d1n2da_ : (ASP50) (LYS80) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Light Chain Mlc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ca1a1 : (THR133) (LYS163) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium perfringens, different strains [TaxId: 1502]
d1asya2 : (LEU228) (LYS266) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Aspartyl-tRNA synthetase (AspRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4kn9l_ : (ASP150) (THR241) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfomicrobium baculatum [TaxId: 525897]
d1em8b_ : (ALA107) (PRO134) [view usage] : c.126.1.1 |DNA polymerase III psi subunit |DNA polymerase III psi subunit |DNA polymerase III psi subunit |DNA polymerase III psi subunit |Escherichia coli [TaxId: 562]
d1qzfa2 : (ASP187) (LYS217) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain |Cryptosporidium hominis [TaxId: 237895]
d2nzwc_ : (LEU124) (ASP173) [view usage] : c.87.1.11 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |FucT-like |Alpha1,3-fucosyltransferase FucT |Helicobacter pylori [TaxId: 210]
d3voya_ : (THR423) (HIS475) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2az0b_ : (VAL19) (GLY71) [view usage] : a.30.8.1 |ROP-like |FHV B2 protein-like |FHV B2 protein-like |B2 |Flock house virus, FHV [TaxId: 12287]
d2aowa_ : (SER7) (ASP37) [view usage] : c.66.1.19 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Histamine methyltransferase |Histamine methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d2nzxc_ : (LEU124) (ASP173) [view usage] : c.87.1.11 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |FucT-like |Alpha1,3-fucosyltransferase FucT |Helicobacter pylori [TaxId: 210]
d2hbva1 : (GLY184) (ILE218) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d1eoka_ : (TYR43) (PHE62) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Endo-beta-N-acetylglucosaminidase |Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]
d4d8gd_ : (LEU205) (THR250) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Chlamydia trachomatis [TaxId: 813]
d1olpa1 : (THR133) (ARG163) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Alpha-toxin, N-terminal domain |Clostridium absonum [TaxId: 29369]
d1rsrb_ : (PHE216) (CYS268) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
d3s11b_ : (ASP145) (ARG170) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza A virus [TaxId: 11320]
d1ntkh_ : (GLU28) (LEU77) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Cow (Bos taurus) [TaxId: 9913]
d1vzaa_ : (PHE104) (LYS138) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Lactobacillus casei [TaxId: 1582]
d1iblm_ : (GLY68) (GLY112) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Thermus thermophilus [TaxId: 274]
d1miob_ : (ALA272) (LYS313) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, beta chain |Clostridium pasteurianum [TaxId: 1501]
d1fjgm_ : (GLY68) (GLY112) [view usage] : a.156.1.1 |S13-like H2TH domain |S13-like H2TH domain |Ribosomal protein S13 |Ribosomal protein S13 |Thermus thermophilus [TaxId: 274]
d1jxzb_ : (ALA219) (ASP254) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |4-Chlorobenzoyl-CoA dehalogenase |Pseudomonas sp., strain CBS-3 [TaxId: 306]
d4ddlb_ : (ASP624) (LYS670) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1s1i0_ : (HIS21) (PRO53) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3uuoa_ : (ASP634) (GLY707) [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n3ka_ : (SER61) (THR97) [view usage] : a.77.1.4 |DEATH domain |DEATH domain |DEATH effector domain, DED |PEA-15 (phosphoprotein enriched in astrocytes 15 kDa) |Chinese hamster (Cricetulus griseus) [TaxId: 10029]
d1ztvb_ : (TYR66) (LYS100) [view usage] : c.1.32.1 |TIM beta/alpha-barrel |TM1631-like |TM1631-like |automated matches |Enterococcus faecalis [TaxId: 226185]
d1f8gb1 : (ASP223) (THR258) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |Nicotinamide nucleotide transhydrogenase dI component |Rhodospirillum rubrum [TaxId: 1085]
d3h1hd1 : (TRP12) (CYS40) [view usage] : a.3.1.3 |Cytochrome c |Cytochrome c |Cytochrome bc1 domain |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1nzyb_ : (ALA219) (ASP254) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |4-Chlorobenzoyl-CoA dehalogenase |Pseudomonas sp., strain CBS-3 [TaxId: 306]
d3voza_ : (THR423) (HIS475) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, c.2, i.1, a.118, c.92, d.117, c.66, c.124, c.14, a.211, e.18, d.104, d.3, c.87, a.25, a.4, a.39, h.3, a.3,
a.29, d.218, a.124, a.77, a.156, a.30, f.28, c.126