Tableau information
Concept source: d1y2ac_ amino acid (a.a.) range (LEU246)(THR279)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU246) (ILE252) H1
(LEU253) (HIS262) H2
(ASP264) (THR279) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 43.2° H2
H3 -150.8° -138.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1alaa_ : (GLN220) (SER246) [view usage] : a.65.1.1 |Annexin |Annexin |Annexin |Annexin V |Chicken (Gallus gallus) [TaxId: 9031]
d3gw9a_ : (ASP193) (ASN253) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1ujwb_ : (TYR323) (GLU436) [view usage] : h.4.9.1 |Antiparallel coiled-coil |Colicin E3 receptor domain |Colicin E3 receptor domain |Colicin E3 receptor domain |Escherichia coli [TaxId: 562]
d1wu3i_ : (LYS4) (GLU99) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |Interferon-beta |Mouse (Mus musculus) [TaxId: 10090]
d2ysub1 : (GLU324) (LYS438) [view usage] : h.4.9.1 |Antiparallel coiled-coil |Colicin E3 receptor domain |Colicin E3 receptor domain |Colicin E3 receptor domain |Escherichia coli [TaxId: 562]
d4dvhb1 : (SER21) (ILE86) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Trypanosoma cruzi [TaxId: 353153]
d1lwua_ : (ASN95) (ALA182) [view usage] : h.1.8.1 |Parallel coiled-coil |Fibrinogen coiled-coil and central regions |Fibrinogen coiled-coil and central regions |Fibrinogen alpha chain |Sea lamprey (Petromyzon marinus) [TaxId: 7757]
d1xsva_ : (GLU74) (GLU110) [view usage] : a.4.13.3 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |YlxM/p13-like |Hypothetical protein SAV1236 |Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]
d4f2na1 : (SER51) (LEU115) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Leishmania major [TaxId: 5664]
d4m32a_ : (SER103) (ILE154) [view usage] : a.25.1.0 |Ferritin-like |Ferritin-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2klya_ : (SER115) (GLY164) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4phqa_ : (ASP7) (TYR104) [view usage] : h.4.4.1 |Antiparallel coiled-coil |Bacterial hemolysins |Hemolysin E (HlyE, ClyA, SheA) |automated matches |Escherichia coli [TaxId: 83333]
d1u7ma1 : (TYR3) (ASN52) [view usage] : k.8.1.1 |Designed four-helix bundle protein |Designed four-helix bundle protein |Designed four-helix bundle protein |Artificial diiron protein |Synthetic, different variants
d2z55a_ : (ARG11) (GLY67) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 29285]
d2nn4a1 : (THR3) (THR62) [view usage] : a.272.1.1 |YqgQ-like |YqgQ-like |YqgQ-like |Hypothetical protein YqgQ |Bacillus subtilis [TaxId: 1423]
d1v8ga2 : (HIS154) (THR180) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Thermus thermophilus [TaxId: 274]
d4kysb_ : (SER354) (ASN375) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Clostridium botulinum [TaxId: 441770]
d1zdna1 : (ILE109) (GLY156) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), E2 S [TaxId: 9606]
d1h8ee1 : (GLU366) (LEU414) [view usage] : a.69.1.1 |Left-handed superhelix |C-terminal domain of alpha and beta subunits of F1 ATP synthase |C-terminal domain of alpha and beta subunits of F1 ATP synthase |F1 ATP synthase beta subunit, domain 3 |Cow (Bos taurus) [TaxId: 9913]
d1s05a_ : (ASP3) (PHE55) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |Cytochrome c-556 |Rhodopseudomonas palustris [TaxId: 1076]
d4j7kb_ : (PRO8) (TYR65) [view usage] : a.25.3.0 |Ferritin-like |EsxAB dimer-like |automated matches |automated matches |Bacillus anthracis [TaxId: 260799]
d1ng9a1 : (THR335) (ASP386) [view usage] : a.113.1.1 |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |Escherichia coli [TaxId: 562]
d1fyzc_ : (ASN137) (ILE193) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase beta subunit |Methylococcus capsulatus [TaxId: 414]
d2ij5a_ : (PRO153) (ASN195) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp121 monooxygenase (P450 Mt2) |Mycobacterium tuberculosis [TaxId: 1773]
d4phoa_ : (ASP7) (PHE101) [view usage] : h.4.4.1 |Antiparallel coiled-coil |Bacterial hemolysins |Hemolysin E (HlyE, ClyA, SheA) |automated matches |Escherichia coli [TaxId: 83333]
d1ft1a_ : (ARG69) (LEU119) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1wp1a_ : (SER339) (GLY447) [view usage] : f.5.1.1 |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane protein OprM |Pseudomonas aeruginosa [TaxId: 287]
d4az9b_ : (TYR39) (ASN101) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h16a_ : (ILE189) (LYS239) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d4az9a_ : (SER40) (ASN101) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wdza1 : (ARG5) (LEU102) [view usage] : a.238.1.3 |BAR/IMD domain-like |BAR/IMD domain-like |IMD domain |BAP2/IRSp53 N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1e6yb1 : (ALA2321) (HIS2362) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanosarcina barkeri [TaxId: 2208]
d1sjja_ : (LEU665) (THR738) [view usage] : i.15.1.1 |Muscle protein complexes |Muscle protein complexes |Muscle protein complexes |Actinin |Chicken (Gallus gallus) [TaxId: 9031]
d1oaoc_ : (LEU62) (TYR118) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit |Moorella thermoacetica [TaxId: 1525]
d1fzic_ : (ASN137) (ILE193) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase beta subunit |Methylococcus capsulatus [TaxId: 414]
d3ongd_ : (THR108) (TYR155) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ekea_ : (THR108) (TYR155) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jcha3 : (ALA318) (LYS450) [view usage] : h.4.9.1 |Antiparallel coiled-coil |Colicin E3 receptor domain |Colicin E3 receptor domain |Colicin E3 receptor domain |Escherichia coli [TaxId: 562]
d3gw9b_ : (ARG195) (ASN253) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1r8lb_ : (LEU333) (PHE364) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-1,4-galactanase |Bacillus licheniformis [TaxId: 1402]
d3llrd_ : (PHE76) (GLY107) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1t0rb_ : (THR114) (CYS179) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouE |Pseudomonas stutzeri [TaxId: 316]
d4phqc_ : (CYS6) (LEU100) [view usage] : h.4.4.1 |Antiparallel coiled-coil |Bacterial hemolysins |Hemolysin E (HlyE, ClyA, SheA) |automated matches |Escherichia coli [TaxId: 83333]
d2yb6a_ : (VAL102) (SER148) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubc2b [TaxId: 9606]
d2g38c_ : (LEU11) (THR81) [view usage] : a.25.4.1 |Ferritin-like |PE/PPE dimer-like |PE |PE25 |Mycobacterium tuberculosis [TaxId: 1773]
d2ybfa_ : (ASP101) (SER148) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubc2b [TaxId: 9606]
d3d5ka_ : (SER339) (GLY447) [view usage] : f.5.1.1 |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane protein OprM |Pseudomonas aeruginosa [TaxId: 287]
d1pgja1 : (GLN400) (THR440) [view usage] : a.100.1.1 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain |6-phosphogluconate dehydrogenase (6PGD) |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1n4pa_ : (ARG69) (THR120) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2xlva_ : (PRO5) (GLY60) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
d3h8ka_ : (SER115) (GLY164) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4pe3a_ : (ASP113) (ASN129) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 349101]
d1il6a_ : (THR21) (LYS129) [view usage] : a.26.1.1 |4-helical cytokines |4-helical cytokines |Long-chain cytokines |Interleukin-6 |Human (Homo sapiens) [TaxId: 9606]
d1oaod_ : (LEU62) (TYR118) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit |Moorella thermoacetica [TaxId: 1525]
d2ccya_ : (PRO5) (LEU53) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |Cytochrome c' |Rhodospirillum molischianum [TaxId: 1083]
d1zj8a3 : (LEU521) (ARG555) [view usage] : d.134.1.1 |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Sulfite reductase NirA |Mycobacterium tuberculosis [TaxId: 1773]
d4j11b_ : (PRO8) (TYR65) [view usage] : a.25.3.0 |Ferritin-like |EsxAB dimer-like |automated matches |automated matches |Bacillus anthracis [TaxId: 260799]
d3fe7a_ : (LEU31) (LEU85) [view usage] : a.42.1.0 |SWIB/MDM2 domain |SWIB/MDM2 domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dova_ : (VAL201) (ALA261) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |alpha-catenin |Mouse (Mus musculus) [TaxId: 10090]
d1gqaa_ : (ALA3) (LYS51) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |Cytochrome c' |Rhodobacter sphaeroides [TaxId: 1063]
d1ijya_ : (SER82) (ARG107) [view usage] : a.141.1.1 |Frizzled cysteine-rich domain |Frizzled cysteine-rich domain |Frizzled cysteine-rich domain |Frizzled 8 (FZ8) |Mouse (Mus musculus) [TaxId: 10090]
d4h3ea1 : (SER52) (ILE117) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Trypanosoma cruzi [TaxId: 353153]
d2aaka_ : (ASP101) (TRP149) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1khca_ : (PHE290) (ALA320) [view usage] : b.34.9.2 |SH3-like barrel |Tudor/PWWP/MBT |PWWP domain |DNA methyltransferase DNMT3B |Mouse (Mus musculus) [TaxId: 10090]
d1avha_ : (GLN220) (SER246) [view usage] : a.65.1.1 |Annexin |Annexin |Annexin |Annexin V |Human (Homo sapiens) [TaxId: 9606]
d3p0ca_ : (TYR50) (HIS116) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4w4ka_ : (PRO8) (THR89) [view usage] : a.25.4.1 |Ferritin-like |PE/PPE dimer-like |PE |automated matches |Mycobacterium tuberculosis [TaxId: 652616]
d2g38a1 : (ALA10) (ALA84) [view usage] : a.25.4.1 |Ferritin-like |PE/PPE dimer-like |PE |PE25 |Mycobacterium tuberculosis [TaxId: 1773]
d3flga_ : (PHE79) (GLY110) [view usage] : b.34.9.2 |SH3-like barrel |Tudor/PWWP/MBT |PWWP domain |DNA methyltransferase DNMT3B |Human (Homo sapiens) [TaxId: 9606]
d1e6ye1 : (ALA5321) (HIS5362) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanosarcina barkeri [TaxId: 2208]
d1v9db_ : (GLU883) (GLY911) [view usage] : a.207.1.1 |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Diaphanous protein homolog 1, dia1 |Mouse (Mus musculus) [TaxId: 10090]
d2fwra1 : (ALA272) (ASN332) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DNA repair protein RAD25 |Archaeoglobus fulgidus [TaxId: 2234]
d1fyzd_ : (ASN137) (ILE193) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase beta subunit |Methylococcus capsulatus [TaxId: 414]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, a.104, a.118, a.65, c.37, c.7, i.15, d.20, a.25, d.134, a.100, b.34, a.4, f.13, e.26, a.24, a.42, a.26, h.4,
c.27, a.113, a.69, a.2, k.8, a.89, d.189, a.238, h.1, a.207, a.141, f.5, a.272