Tableau information
Concept source: d1tljb_ amino acid (a.a.) range (VAL5)(ASN40)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL5) (TYR18) H1
(LYS21) (ASP27) H2
(LEU31) (ASN40) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -56.1° H2
H3 -151.9° 133.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1yozb_ : (GLU64) (VAL120) [view usage] : a.253.1.1 |AF0941-like |AF0941-like |AF0941-like |Hypothetical protein AF0941 |Archaeoglobus fulgidus [TaxId: 2234]
d2igse_ : (GLN61) (ILE93) [view usage] : d.2.1.11 |Lysozyme-like |Lysozyme-like |PA2222-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1htoa2 : (GLN413) (ARG456) [view usage] : d.128.1.1 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Glutamine synthetase catalytic domain |Glutamine synthetase, C-terminal domain |Mycobacterium tuberculosis [TaxId: 1773]
d2yvea2 : (ALA131) (GLU171) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Transcriptional regulator Cgl2612 |Corynebacterium glutamicum [TaxId: 1718]
d1jgja_ : (VAL168) (ALA216) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1yqya1 : (SER711) (ASN732) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2btda_ : (SER4) (ALA57) [view usage] : a.208.1.0 |DhaL-like |DhaL-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2je8a5 : (GLU462) (GLU494) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Five-domain beta-mannosidase, domain 3 |Bacteroides thetaiotaomicron [TaxId: 818]
d1xfha_ : (SER277) (ILE309) [view usage] : f.49.1.1 |Proton glutamate symport protein |Proton glutamate symport protein |Proton glutamate symport protein |Proton glutamate symport protein |Pyrococcus horikoshii [TaxId: 53953]
d1nxea_ : (ALA267) (ASP293) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Escherichia coli [TaxId: 562]
d1p3ta_ : (GLY104) (LEU163) [view usage] : a.132.1.2 |Heme oxygenase-like |Heme oxygenase-like |Heme oxygenase HemO (PigA) |Heme oxygenase HemO (PigA) |Neisseria meningitidis [TaxId: 487]
d2o2da_ : (SER328) (ALA363) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Trypanosoma brucei [TaxId: 5702]
d4b8na_ : (LEU41) (ALA59) [view usage] : d.120.1.0 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |automated matches |automated matches |Ostreococcus tauri virus 2 [TaxId: 696472]
d4gr6a_ : (GLY13) (ARG54) [view usage] : a.280.1.0 |RbcX-like |RbcX-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2cvpa_ : (SER275) (LEU308) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1qwjb_ : (ARG239) (PHE262) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP acylneuraminate synthetase |Mouse (Mus musculus) [TaxId: 10090]
d1pw6b_ : (LEU53) (LEU96) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Interleukin-2 (IL-2) |Human (Homo sapiens) [TaxId: 9606]
d2igsa1 : (GLN62) (ILE93) [view usage] : d.2.1.11 |Lysozyme-like |Lysozyme-like |PA2222-like |Hypothetical protein PA2222 |Pseudomonas aeruginosa [TaxId: 287]
d1gsoa2 : (GLU73) (GLY103) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Glycinamide ribonucleotide synthetase (GAR-syn), N-domain |Escherichia coli [TaxId: 562]
d3pnlb_ : (SER4) (ALA57) [view usage] : a.208.1.0 |DhaL-like |DhaL-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1yifa1 : (LYS491) (GLY506) [view usage] : b.29.1.23 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Beta-D-xylosidase C-terminal domain-like |Beta-D-xylosidase C-terminal domain |Bacillus subtilis [TaxId: 1423]
d1oaoa_ : (ASP512) (ASN536) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit |Moorella thermoacetica [TaxId: 1525]
d1n95a_ : (ASN329) (SER365) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3fgaa_ : (TRP417) (LEU443) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Mouse (Mus musculus) [TaxId: 10090]
d3aujg_ : (THR60) (ARG80) [view usage] : a.23.2.1 |Open three-helical up-and-down bundle |Diol dehydratase, gamma subunit |Diol dehydratase, gamma subunit |Diol dehydratase, gamma subunit |Klebsiella oxytoca [TaxId: 571]
d4qgkb_ : (LEU20) (ASN74) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ljxa_ : (SER309) (SER344) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j7na2 : (SER711) (THR731) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2vi0a_ : (LEU107) (GLY146) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Clostridium thermocellum [TaxId: 1515]
d2ckdb_ : (ASP59) (GLY102) [view usage] : c.66.1.57 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |ML2640-like |automated matches |Mycobacterium leprae [TaxId: 1769]
d1e6yb1 : (GLY2369) (ASP2398) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanosarcina barkeri [TaxId: 2208]
d2yrwa1 : (ALA72) (GLY101) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d2yrxa1 : (GLU71) (GLY101) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d1t1ua2 : (THR466) (GLY509) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Choline O-acetyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1dxma_ : (LYS86) (TRP99) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Protein H of glycine cleavage system |Pea (Pisum sativum) [TaxId: 3888]
d2o57a1 : (TYR242) (GLY282) [view usage] : c.66.1.18 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Mycolic acid cyclopropane synthase |Putative sarcosine dimethylglycine methyltransferase |Red algae (Galdieria sulphuraria) [TaxId: 130081]
d1hbmb1 : (GLY371) (ASP400) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1j7nb2 : (SER711) (ASN732) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2yveb2 : (ALA131) (ILE173) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Transcriptional regulator Cgl2612 |Corynebacterium glutamicum [TaxId: 1718]
d2cexa_ : (LEU272) (ALA303) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Sialic acid-binding protein SiaP |Haemophilus influenzae [TaxId: 727]
d3hjea1 : (THR347) (VAL372) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1ab3a_ : (LEU56) (LEU84) [view usage] : a.16.1.2 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |Ribosomal protein S15 |Ribosomal protein S15 |Thermus thermophilus [TaxId: 274]
d1n2za_ : (SER111) (TYR150) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Vitamin B12 binding protein BtuF |Escherichia coli [TaxId: 562]
d3be7a2 : (ASP265) (VAL292) [view usage] : c.1.9.18 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Zn-dependent arginine carboxypeptidase-like |Zn-dependent arginine carboxypeptidase |Unidentified organism [TaxId: 32644]
d1w85g_ : (TYR102) (GLY124) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |Pyruvate dehydrogenase E1-alpha, PdhA |Bacillus stearothermophilus [TaxId: 1422]
d3ag7a_ : (ASN600) (THR647) [view usage] : a.2.3.0 |Long alpha-hairpin |Chaperone J-domain |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2vqua5 : (ILE463) (GLU502) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Five-domain beta-mannosidase, domain 3 |Bacteroides thetaiotaomicron [TaxId: 818]
d1n4pa_ : (ASN329) (SER368) [view usage] : a.118.6.1 |alpha-alpha superhelix |Protein prenylyltransferase |Protein prenylyltransferase |Protein farnesyltransferase alpha-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ud0d_ : (LEU542) (SER613) [view usage] : a.8.4.1 |immunoglobulin/albumin-binding domain-like |Heat shock protein 70kD (HSP70), C-terminal subdomain |Heat shock protein 70kD (HSP70), C-terminal subdomain |DnaK |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2hf3a2 : (PHE352) (PHE375) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1j77a_ : (GLY104) (LEU163) [view usage] : a.132.1.2 |Heme oxygenase-like |Heme oxygenase-like |Heme oxygenase HemO (PigA) |Heme oxygenase HemO (PigA) |Neisseria meningitidis [TaxId: 487]
d1t1ua1 : (PRO30) (GLY62) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Choline O-acetyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1p35a_ : (ASN107) (CYS137) [view usage] : b.28.1.1 |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d1mjga_ : (ASP512) (ASN536) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit |Moorella thermoacetica [TaxId: 1525]
d1p35b_ : (ASN107) (LYS135) [view usage] : b.28.1.1 |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d4elzb_ : (VAL420) (ILE443) [view usage] : e.11.1.1 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |Vibrio fischeri [TaxId: 312309]
d2lbba_ : (SER22) (LEU82) [view usage] : a.11.1.0 |Acyl-CoA binding protein-like |Acyl-CoA binding protein |automated matches |automated matches |Babesia bovis [TaxId: 5865]
d3dgcl_ : (SER84) (LEU129) [view usage] : a.26.1.3 |4-helical cytokines |4-helical cytokines |Interferons/interleukin-10 (IL-10) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4arha_ : (TYR43) (GLY77) [view usage] : b.60.1.4 |Lipocalins |Lipocalins |Hypothetical protein YodA |automated matches |Salmonella enterica [TaxId: 440534]
d4llsa_ : (SER65) (THR122) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Roseobacter denitrificans [TaxId: 375451]
d2bvda_ : (LEU107) (GLY146) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Clostridium thermocellum [TaxId: 1515]
d1e6ye1 : (GLY5369) (ASP5398) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanosarcina barkeri [TaxId: 2208]
d1ud0a_ : (ARG537) (SER613) [view usage] : a.8.4.1 |immunoglobulin/albumin-binding domain-like |Heat shock protein 70kD (HSP70), C-terminal subdomain |Heat shock protein 70kD (HSP70), C-terminal subdomain |DnaK |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4o4ib2 : (THR396) (ALA438) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d3u82a_ : (PRO198) (GLY218) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human herpesvirus 1 [TaxId: 10299]
d2qi9f_ : (SER111) (LYS153) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Vitamin B12 binding protein BtuF |Escherichia coli [TaxId: 562]
d1an0a_ : (GLN116) (PRO136) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |CDC42 |Human (Homo sapiens) [TaxId: 9606]
d1f1ha2 : (SER413) (THR456) [view usage] : d.128.1.1 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Glutamine synthetase catalytic domain |Glutamine synthetase, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d1grnb_ : (LEU357) (LEU383) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |Cdc42GAP |Human (Homo sapiens) [TaxId: 9606]
d2psfa_ : (ASP158) (ILE190) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Renilla reniformis [TaxId: 6136]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, a.118, c.68, b.29, c.82, a.128, c.92, c.66, c.80, d.92, c.37, c.36, c.55, a.103, d.2, b.60, b.1, e.11,
a.132, c.43, b.84, d.79, a.4, f.13, d.128, e.26, c.30, a.23, a.116, a.26, d.120, a.11, a.8, a.280, a.2, f.49, a.121, a.208,
a.16, a.89, b.28, d.282, a.253