Tableau information
Concept source: d4m9db_ amino acid (a.a.) range (ARG146)(ILE196)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG146) (ASP152) H1
(ALA155) (ASP176) H2
(ASP183) (ILE196) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -110.2° H2
H3 -106.4° 132.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2gvsa_ : (ASN61) (TYR100) [view usage] : a.118.21.0 |alpha-alpha superhelix |Chemosensory protein Csp2 |automated matches |automated matches |Desert locust (Schistocerca gregaria) [TaxId: 7010]
d2bhnc1 : (SER194) (MET225) [view usage] : a.60.2.5 |SAM domain-like |RuvA domain 2-like |Hef domain-like |DNA repair endonuclease XPF |Aeropyrum pernix [TaxId: 56636]
d2bgwb1 : (LEU195) (LEU224) [view usage] : a.60.2.5 |SAM domain-like |RuvA domain 2-like |Hef domain-like |DNA repair endonuclease XPF |Aeropyrum pernix [TaxId: 56636]
d4mhva_ : (GLY136) (LYS168) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1etha2 : (MET235) (CYS262) [view usage] : c.69.1.19 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Pancreatic lipase, N-terminal domain |Pancreatic lipase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2p0wa_ : (SER301) (THR340) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Histone acetyltransferase HAT1 |Human (Homo sapiens) [TaxId: 9606]
d2b0ta_ : (ILE694) (LEU736) [view usage] : c.77.1.2 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Monomeric isocitrate dehydrogenase |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d2dvia3 : (THR384) (TYR411) [view usage] : d.58.16.2 |Ferredoxin-like |PAP/Archaeal CCA-adding enzyme, C-terminal domain |Archaeal tRNA CCA-adding enzyme |tRNA nucleotidyltransferase, C-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d2bgwa1 : (LEU195) (MET225) [view usage] : a.60.2.5 |SAM domain-like |RuvA domain 2-like |Hef domain-like |DNA repair endonuclease XPF |Aeropyrum pernix [TaxId: 56636]
d1x54a2 : (ASP235) (THR275) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d2ao2a_ : (HIS151) (ALA195) [view usage] : a.130.1.4 |Chorismate mutase II |Chorismate mutase II |Secreted chorismate mutase-like |Secreted chorismate mutase |Mycobacterium tuberculosis [TaxId: 1773]
d1zwsa_ : (PRO186) (GLY213) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4fyra4 : (ASN869) (PHE909) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1r89a3 : (PRO385) (TYR411) [view usage] : d.58.16.2 |Ferredoxin-like |PAP/Archaeal CCA-adding enzyme, C-terminal domain |Archaeal tRNA CCA-adding enzyme |tRNA nucleotidyltransferase, C-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d1kf6d_ : (ASP47) (THR117) [view usage] : f.21.2.2 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) |Fumarate reductase subunit FrdD |Escherichia coli [TaxId: 562]
d1mlyb_ : (PHE149) (LEU169) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA |Escherichia coli [TaxId: 562]
d1zm8a_ : (VAL245) (VAL272) [view usage] : d.4.1.2 |His-Me finger endonucleases |His-Me finger endonucleases |DNA/RNA non-specific endonuclease |Nuclease NucA |Nostoc sp. PCC 7120 [TaxId: 103690]
d1b4ua_ : (ALA47) (ARG77) [view usage] : a.88.1.1 |LigA subunit of an aromatic-ring-opening dioxygenase LigAB |LigA subunit of an aromatic-ring-opening dioxygenase LigAB |LigA subunit of an aromatic-ring-opening dioxygenase LigAB |LigA subunit of an aromatic-ring-opening dioxygenase LigAB |Sphingomonas paucimobilis, formerly Pseudomonas paucimobilis [TaxId: 13689]
d1ynwb_ : (GLU253) (GLN306) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1v33a_ : (TYR202) (SER238) [view usage] : d.264.1.1 |Prim-pol domain |Prim-pol domain |PriA-like |DNA primase |Pyrococcus horikoshii [TaxId: 53953]
d2enva_ : (GLU92) (PHE145) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fjgc2 : (ASN108) (GLY145) [view usage] : d.53.1.1 |Ribosomal protein S3 C-terminal domain |Ribosomal protein S3 C-terminal domain |Ribosomal protein S3 C-terminal domain |Ribosomal protein S3 C-terminal domain |Thermus thermophilus [TaxId: 274]
d4n0fd3 : (HIS510) (ALA561) [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3v09a2 : (ASP314) (THR363) [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1xuqa1 : (VAL55) (LEU90) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2d0fa3 : (HIS272) (TYR307) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Thermoactinomyces vulgaris [TaxId: 2026]
d1e1eb_ : (ILE284) (LEU321) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Maize (Zea mays), zmglu1 [TaxId: 4577]
d1lj8a3 : (VAL318) (ALA368) [view usage] : a.100.1.9 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Mannitol 2-dehydrogenase |Mannitol 2-dehydrogenase |Pseudomonas fluorescens [TaxId: 294]
d3mw6d_ : (THR2) (TYR35) [view usage] : a.136.1.1 |FinO-like |FinO-like |FinO-like |Hypothetical protein NMB1681 |Neisseria meningitidis [TaxId: 487]
d3hyqa_ : (PHE144) (ASP168) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Isopentenyl diphosphate isomerase |Salmonella enterica [TaxId: 99287]
d1gpqa_ : (THR5) (GLY35) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Escherichia coli [TaxId: 562]
d1cd32_ : (THR30) (VAL86) [view usage] : a.84.1.1 |Scaffolding protein gpD of bacteriophage procapsid |Scaffolding protein gpD of bacteriophage procapsid |Scaffolding protein gpD of bacteriophage procapsid |Scaffolding protein gpD of bacteriophage procapsid |Bacteriophage phi-X174 [TaxId: 10847]
d4oy7e_ : (SER43) (ASN80) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Streptomyces coelicolor [TaxId: 100226]
d1by4a_ : (GLU1153) (GLN1206) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Retinoid X receptor (RXR-alpha) DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d2onka1 : (LEU211) (LEU239) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Molybdate/tungstate import ATP-binding protein WtpC (ModC) |Archaeoglobus fulgidus [TaxId: 2234]
d2dfla1 : (LEU36) (ASP70) [view usage] : a.60.4.1 |SAM domain-like |Rad51 N-terminal domain-like |DNA repair protein Rad51, N-terminal domain |DNA repair protein Rad51, N-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d2fp2b_ : (HIS151) (ALA195) [view usage] : a.130.1.4 |Chorismate mutase II |Chorismate mutase II |Secreted chorismate mutase-like |Secreted chorismate mutase |Mycobacterium tuberculosis [TaxId: 1773]
d2f7ee_ : (ALA206) (GLY253) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |cAMP-dependent PK, catalytic subunit |Cow (Bos taurus) [TaxId: 9913]
d1sxda_ : (GLY219) (LEU252) [view usage] : a.60.1.1 |SAM domain-like |SAM/Pointed domain |Pointed domain |GABP-alpha subunit |Mouse (Mus musculus) [TaxId: 10090]
d2ehoi1 : (PHE103) (VAL162) [view usage] : a.278.1.4 |GINS helical bundle-like |GINS helical bundle-like |SLD5 N-terminal domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gpqb_ : (THR5) (GLY35) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Escherichia coli [TaxId: 562]
d1s07b_ : (PHE149) (LEU169) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA |Escherichia coli [TaxId: 562]
d1ujzb_ : (PHE492) (GLY524) [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E7 |Escherichia coli [TaxId: 562]
d2l47a_ : (THR128) (LYS155) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |automated matches |Bacillus phage [TaxId: 347962]
d2m9ga_ : (ILE45) (HIS86) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kkha1 : (ASN63) (LYS86) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Mevalonate kinase |Methanococcus jannaschii [TaxId: 2190]
d2bhnb1 : (GLU196) (MET225) [view usage] : a.60.2.5 |SAM domain-like |RuvA domain 2-like |Hef domain-like |DNA repair endonuclease XPF |Aeropyrum pernix [TaxId: 56636]
d9ruba1 : (PRO422) (PRO449) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Rhodospirillum rubrum [TaxId: 1085]
d1ji1a3 : (HIS272) (TYR307) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Maltogenic amylase, central domain |Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, d.58, a.118, c.77, d.144, c.37, d.104, d.14, b.1, d.108, a.126, f.21, d.118, a.100, a.39, d.113, d.4, a.60,
a.278, d.264, a.136, a.130, a.2, g.39, a.84, d.233, a.88, d.53