Tableau information
Concept source: d3ejee_ amino acid (a.a.) range (THR22)(ASP71)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR22) (GLN34) H1
(SER47) (GLY53) H2
(ASP55) (ASP71) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -52.3° H2
H3 145.1° 117.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ix0a4 : (ASP420) (THR445) [view usage] : b.40.4.16 |OB-fold |Nucleic acid-binding proteins |RNB domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
d2ps4b_ : (SER229) (LYS280) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d2nv2c_ : (SER178) (GLY203) [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Bacillus subtilis [TaxId: 1423]
d4g9ja_ : (CYS127) (LEU159) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2im5a1 : (THR63) (GLY87) [view usage] : d.41.2.2 |alpha/beta-Hammerhead |Nicotinate/Quinolinate PRTase N-terminal domain-like |Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like |Nicotinate phosphoribosyltransferase, N-terminal domain |Porphyromonas gingivalis [TaxId: 837]
d4mu8a_ : (SER2) (GLY37) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Mitochondrial cytochrome c |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1kwja_ : (ASP40) (HIS66) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c7 (cytochrome c551.5, PpcA) |Desulfuromonas acetoxidans [TaxId: 891]
d2icta_ : (THR49) (VAL83) [view usage] : a.35.1.3 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |SinR domain-like |Antitoxin HigA |Escherichia coli [TaxId: 562]
d3uwya_ : (HIS97) (GLY122) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Staphylococcus aureus [TaxId: 282458]
d2hmka2 : (SER262) (SER294) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas sp. [TaxId: 69011]
d1mzgb_ : (ARG103) (HIS141) [view usage] : d.224.1.1 |SufE/NifU |SufE/NifU |SufE-like |SufE (YhnA) |Escherichia coli [TaxId: 562]
d1ghea_ : (THR10) (GLY60) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Tabtoxin resistance protein |Pseudomonas syringae [TaxId: 317]
d1eg9a2 : (SER262) (SER294) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas putida [TaxId: 303]
d4cj9a_ : (GLY95) (GLY125) [view usage] : a.298.1.1 |Left-handed alpha-alpha superhelix |TAL effector-like |TAL (transcription activator-like) effector |BurrH |Burkholderia rhizoxinica [TaxId: 412963]
d1nexb1 : (SER327) (TYR366) [view usage] : a.158.1.1 |F-box domain |F-box domain |F-box domain |Cdc4 F-box and linker domains |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4p1ba_ : (LYS250) (TYR295) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Pseudomonas mendocina [TaxId: 300]
d1pbwa_ : (ARG262) (THR296) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |p85 alpha subunit RhoGAP domain |Human (Homo sapiens) [TaxId: 9606]
d3mw6f_ : (ILE48) (ARG74) [view usage] : a.136.1.1 |FinO-like |FinO-like |FinO-like |Hypothetical protein NMB1681 |Neisseria meningitidis [TaxId: 487]
d2bmoa2 : (SER260) (SER292) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Nitrobenzene dioxygenase alpha subunit, NBDO-alpha |Comamonas sp. JS765 [TaxId: 58226]
d4bqfb_ : (LEU461) (GLN483) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3tuia_ : (PHE68) (LEU113) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4jdya_ : (SER183) (GLY208) [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1oyga_ : (GLY273) (GLN292) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d3vlwa_ : (VAL349) (ASP380) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Sphingomonas sp. [TaxId: 90322]
d1mf8a_ : (ARG154) (LEU185) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-2B (PP-2B, calcineurin A subunit) |Human (Homo sapiens) [TaxId: 9606]
d1perl_ : (PRO42) (LEU60) [view usage] : a.35.1.2 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Phage repressors |434 C1 repressor, DNA-binding domain |Bacteriophage 434 [TaxId: 10712]
d1ztra1 : (SER10) (ARG53) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Engrailed Homeodomain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1vrma1 : (SER306) (LEU322) [view usage] : d.96.2.1 |T-fold |ApbE-like |ApbE-like |Hypothetical protein TM1553 |Thermotoga maritima [TaxId: 2336]
d3mw6a_ : (ILE48) (ARG73) [view usage] : a.136.1.1 |FinO-like |FinO-like |FinO-like |Hypothetical protein NMB1681 |Neisseria meningitidis [TaxId: 487]
d3voya_ : (ASN375) (ILE420) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3gxkb_ : (MET45) (SER74) [view usage] : d.2.1.5 |Lysozyme-like |Lysozyme-like |G-type lysozyme |automated matches |Atlantic cod (Gadus morhua) [TaxId: 8049]
d3mueb_ : (PRO112) (SER131) [view usage] : c.26.1.4 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Salmonella typhimurium [TaxId: 99287]
d1o7ga2 : (SER262) (SER294) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas putida [TaxId: 303]
d1jh8a_ : (THR180) (LYS237) [view usage] : c.39.1.1 |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Salmonella typhimurium [TaxId: 90371]
d1hlva1 : (THR9) (ARG34) [view usage] : a.4.1.7 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Centromere-binding |DNA-binding domain of centromere binding protein B (CENP-B) |Human (Homo sapiens) [TaxId: 9606]
d2f8cf_ : (SER321) (ILE348) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ps7b_ : (SER229) (PHE277) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d3n8ha_ : (LEU110) (THR139) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Francisella tularensis [TaxId: 177416]
d4al1a_ : (LEU13) (SER61) [view usage] : f.56.1.0 |MAPEG domain-like |MAPEG domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2pene_ : (ASP54) (GLN111) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. pcc 7002 [TaxId: 32049]
d1fkca_ : (ASN171) (GLY229) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Human (Homo sapiens) [TaxId: 9606]
d1y6da_ : (ASP70) (TRP112) [view usage] : a.24.10.5 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Phosphorelay protein luxU |Phosphorelay protein luxU |Vibrio harveyi [TaxId: 669]
d2o8aa_ : (ALA128) (LEU159) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-1 (PP-1) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2ggma1 : (ASP49) (ASP77) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d2g18d_ : (SER195) (VAL239) [view usage] : d.248.2.1 |Coproporphyrinogen III oxidase |Ferredoxin-dependent bilin reductase |Ferredoxin-dependent bilin reductase |automated matches |Anabaena sp. [TaxId: 1167]
d1bsla_ : (LEU247) (SER269) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |Bacterial luciferase beta chain, LuxB |Vibrio harveyi [TaxId: 669]
d4ng6a_ : (SER321) (ILE348) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hmja2 : (SER262) (SER294) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas sp. [TaxId: 306]
d4al0a_ : (LEU13) (SER61) [view usage] : f.56.1.0 |MAPEG domain-like |MAPEG domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tlqa_ : (GLY97) (LYS125) [view usage] : a.195.1.1 |YutG-like |YutG-like |YutG-like |Hypothetical protein YpjQ |Bacillus subtilis [TaxId: 1423]
d1otka_ : (LEU163) (GLU199) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Phenylacetic acid degradation protein PaaC |Escherichia coli [TaxId: 562]
d2aelb_ : (SER229) (PHE277) [view usage] : a.128.1.5 |Terpenoid synthases |Terpenoid synthases |Trichodiene synthase |Trichodiene synthase |Fusarium sporotrichioides [TaxId: 5514]
d1ndoe2 : (SER262) (ARG293) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas putida [TaxId: 303]
d1ho1c_ : (HIS216) (GLY243) [view usage] : c.1.24.1 |TIM beta/alpha-barrel |Pyridoxine 5'-phosphate synthase |Pyridoxine 5'-phosphate synthase |Pyridoxine 5'-phosphate synthase |Escherichia coli [TaxId: 562]
d1xsza1 : (PRO152) (LYS190) [view usage] : a.118.3.1 |alpha-alpha superhelix |Sec7 domain |Sec7 domain |RalF, N-terminal domain |Legionella pneumophila [TaxId: 446]
d3muea_ : (PRO112) (SER131) [view usage] : c.26.1.4 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) |Salmonella typhimurium [TaxId: 99287]
d1wpia1 : (THR52) (GLN73) [view usage] : c.47.1.18 |Thioredoxin fold |Thioredoxin-like |YKR049C-like |Hypothetical protein YKR049C |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2dy4a2 : (PRO738) (GLU770) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d1pbwb_ : (ARG262) (TRP298) [view usage] : a.116.1.1 |GTPase activation domain, GAP |GTPase activation domain, GAP |BCR-homology GTPase activation domain (BH-domain) |p85 alpha subunit RhoGAP domain |Human (Homo sapiens) [TaxId: 9606]
d1a2va3 : (VAL118) (VAL151) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Copper amine oxidase, domains 1 and 2 |Yeast (Hansenula polymorpha) [TaxId: 4905]
d3voza_ : (SER374) (ILE420) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nyva_ : (SER17) (ASN77) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d3uora_ : (GLN105) (THR126) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.298, e.8, e.3, c.1, c.94, d.159, a.118, c.108, c.26, b.67, a.128, d.129, b.40, c.39, c.47, d.2, c.87, d.248, d.96, d.108,
a.25, d.17, d.41, a.4, a.39, a.138, a.3, a.24, a.116, d.6, d.224, a.28, a.136, a.35, a.280, a.158, f.58, f.56, a.195