Tableau information
Concept source: d1nr5b_ amino acid (a.a.) range (ASN213)(ASP257)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN213) (ARG223) H1
(HIS230) (THR235) H2
(THR235) (ASP257) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 163.3° H2
H3 -109.9° 83.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2hqtj_ : (THR66) (GLU112) [view usage] : a.45.1.2 |GST C-terminal domain-like |GST C-terminal domain-like |Arc1p N-terminal domain-like |GU4 nucleic-binding protein 1, Arc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1xc5a1 : (THR439) (GLU477) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |Nuclear receptor corepressor 2 |Human (Homo sapiens) [TaxId: 9606]
d1hiwc_ : (LEU64) (ALA119) [view usage] : a.61.1.1 |Retroviral matrix proteins |Retroviral matrix proteins |Immunodeficiency virus matrix proteins |HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) |Human immunodeficiency virus type 1 [TaxId: 11676]
d1dlca3 : (LYS63) (MET117) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]
d4arxa1 : (ILE36) (ILE84) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |automated matches |Bacillus thuringiensis [TaxId: 29339]
d1ih5a_ : (LEU9) (ILE70) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |Aquaporin-1 |Human (Homo sapiens) [TaxId: 9606]
d2qfla_ : (PRO3) (HIS62) [view usage] : e.7.1.0 |Carbohydrate phosphatase |Carbohydrate phosphatase |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1g7oa1 : (PRO84) (SER140) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Glutaredoxin 2 |Escherichia coli [TaxId: 562]
d1cmza_ : (VAL161) (LEU206) [view usage] : a.91.1.1 |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Regulator of G-protein signaling, RGS |Galpha interacting protein, GaIP |Human (Homo sapiens) [TaxId: 9606]
d4m87a_ : (PRO96) (ALA121) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Neisseria meningitidis [TaxId: 272831]
d2hqtl_ : (THR66) (GLU112) [view usage] : a.45.1.2 |GST C-terminal domain-like |GST C-terminal domain-like |Arc1p N-terminal domain-like |GU4 nucleic-binding protein 1, Arc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2h5nd_ : (GLU81) (LEU133) [view usage] : a.287.1.2 |TerB-like |TerB-like |PG1108-like |Hypothetical protein PG1108 |Porphyromonas gingivalis [TaxId: 837]
d3tgla_ : (THR10) (CYS43) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Rhizomucor miehei [TaxId: 4839]
d4arxd1 : (ILE36) (ILE84) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |automated matches |Bacillus thuringiensis [TaxId: 29339]
d3vlwa_ : (TRP438) (GLN489) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Sphingomonas sp. [TaxId: 90322]
d4jaxa2 : (TYR345) (GLY407) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Kluyveromyces lactis [TaxId: 284590]
d3nahb_ : (ARG439) (PHE490) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d4ke9a_ : (LEU55) (SER76) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus sp. [TaxId: 129908]
d1wh5a_ : (THR25) (ASN72) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |ZF-HD homeobox protein At5g65410 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2hqtb_ : (THR66) (GLU112) [view usage] : a.45.1.2 |GST C-terminal domain-like |GST C-terminal domain-like |Arc1p N-terminal domain-like |GU4 nucleic-binding protein 1, Arc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1d5ya2 : (ARG57) (GLN95) [view usage] : a.4.1.8 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |AraC type transcriptional activator |Rob transcription factor, N-terminal domain |Escherichia coli [TaxId: 562]
d1h88c1 : (THR44) (LEU86) [view usage] : a.4.1.3 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Myb/SANT domain |c-Myb, DNA-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d1k5oa_ : (ILE43) (LEU84) [view usage] : a.165.1.1 |Myosin phosphatase inhibitor 17kDa protein, CPI-17 |Myosin phosphatase inhibitor 17kDa protein, CPI-17 |Myosin phosphatase inhibitor 17kDa protein, CPI-17 |Myosin phosphatase inhibitor 17kDa protein, CPI-17 |Pig (Sus scrofa) [TaxId: 9823]
d3eb7a1 : (GLU66) (ILE122) [view usage] : f.1.3.0 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |automated matches |automated matches |Bacillus thuringiensis [TaxId: 1428]
d2hqtn_ : (THR66) (GLU112) [view usage] : a.45.1.2 |GST C-terminal domain-like |GST C-terminal domain-like |Arc1p N-terminal domain-like |GU4 nucleic-binding protein 1, Arc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ldfa_ : (THR6) (GLY64) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |Glycerol uptake facilitator protein GlpF |Escherichia coli [TaxId: 562]
d4arxb1 : (ILE36) (ILE84) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |automated matches |Bacillus thuringiensis [TaxId: 29339]
d1eysh1 : (LYS215) (GLY256) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |Photosynthetic reaction centre |Thermochromatium tepidum [TaxId: 1050]
d2h5nb_ : (GLU81) (LYS131) [view usage] : a.287.1.2 |TerB-like |TerB-like |PG1108-like |Hypothetical protein PG1108 |Porphyromonas gingivalis [TaxId: 837]
d2jdqb_ : (THR268) (LEU304) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dxrh1 : (LEU214) (GLU255) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |Photosynthetic reaction centre |Rhodopseudomonas viridis [TaxId: 1079]
d3dvua_ : (SER85) (PHE132) [view usage] : f.1.4.1 |Toxins' membrane translocation domains |Bcl-2 inhibitors of programmed cell death |Bcl-2 inhibitors of programmed cell death |Bcl-2 homolog V-bcl-2 |Murid herpesvirus 4 [TaxId: 33708]
d2h5na1 : (GLU81) (ASN132) [view usage] : a.287.1.2 |TerB-like |TerB-like |PG1108-like |Hypothetical protein PG1108 |Porphyromonas gingivalis [TaxId: 837]
d1vbga3 : (THR345) (HIS381) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Maize (Zea mays) [TaxId: 4577]
d2qvja_ : (ALA129) (ASP188) [view usage] : a.260.1.1 |Rhabdovirus nucleoprotein-like |Rhabdovirus nucleoprotein-like |Rhabdovirus nucleocapsid protein |Nucleoprotein |Vesicular stomatitis indiana virus [TaxId: 11277]
d1ciya3 : (THR34) (ILE84) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]
d2hqtt_ : (SER67) (GLU112) [view usage] : a.45.1.2 |GST C-terminal domain-like |GST C-terminal domain-like |Arc1p N-terminal domain-like |GU4 nucleic-binding protein 1, Arc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1kkoa2 : (LEU110) (GLN159) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |beta-Methylaspartase |Citrobacter amalonaticus [TaxId: 35703]
d2hqtf_ : (THR66) (GLU112) [view usage] : a.45.1.2 |GST C-terminal domain-like |GST C-terminal domain-like |Arc1p N-terminal domain-like |GU4 nucleic-binding protein 1, Arc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3wmmh2 : (LYS215) (GLY256) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |automated matches |Thermochromatium tepidum [TaxId: 1050]
d1iufa1 : (GLU11) (THR64) [view usage] : a.4.1.7 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Centromere-binding |Ars-binding protein 1, ABP1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1fx8a_ : (THR6) (GLY64) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |Glycerol uptake facilitator protein GlpF |Escherichia coli [TaxId: 562]
d2ld5a_ : (THR15) (LEU69) [view usage] : a.4.1.0 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3j38n_ : (GLU86) (ALA151) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.69, c.94, c.2, i.1, a.118, e.22, c.55, e.7, d.142, a.4, b.41, a.45, f.1, a.91, f.19, d.54, a.61, a.260, a.165,
a.287