Tableau information
Concept source: d3q37c_ amino acid (a.a.) range (THR131)(ARG162)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR131) (ALA137) H1
(ARG139) (LEU155) H2
(LYS157) (ARG162) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 113.3° H2
H3 -123.3° 111.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2znda_ : (GLN25) (PHE72) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dfky_ : (GLN14) (GLU62) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Essential Chain |Bay scallop (Aequipecten irradians) [TaxId: 31199]
d1uw8a_ : (THR169) (SER192) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d2veia_ : (THR130) (LYS161) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1qo0b_ : (THR262) (ILE318) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
d1zs4d_ : (GLU9) (ILE40) [view usage] : a.35.1.9 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Bacteriophage CII protein |Regulatory protein cII |Bacteriophage lambda [TaxId: 10710]
d1np8a_ : (SER11) (MET67) [view usage] : a.39.1.8 |EF Hand-like |EF-hand |Penta-EF-hand proteins |Calpain small (regulatory) subunit (domain VI) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1niwa_ : (SER81) (GLU127) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2nxqa_ : (ALA4) (TYR62) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |EHCABP |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d3huta_ : (PRO294) (THR348) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 269796]
d4ds7b_ : (GLU7) (GLU55) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Kluyveromyces lactis [TaxId: 284590]
d1wsca1 : (GLN160) (LEU188) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |Hypothetical protein ST0229 |Sulfolobus tokodaii [TaxId: 111955]
d2ohha1 : (LEU182) (GLY221) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
d2nxqb_ : (ALA4) (TYR62) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |EHCABP |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d3ci0k2 : (ASP155) (VAL196) [view usage] : a.60.16.1 |SAM domain-like |GspK insert domain-like |GspK insert domain-like |Pseudopilin GspK |Escherichia coli [TaxId: 562]
d1j3ua_ : (GLY84) (MET137) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |L-aspartate ammonia lyase |Bacillus sp., ym55-1 [TaxId: 1409]
d3c3ea_ : (GLY72) (GLY121) [view usage] : c.143.1.1 |CofD-like |CofD-like |CofD-like |LPPG:FO 2-phospho-L-lactate transferase CofD |Methanosarcina mazei [TaxId: 2209]
d2v09a_ : (GLN167) (SER192) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
d3aajb_ : (LEU28) (PHE72) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4b8na_ : (THR64) (LEU86) [view usage] : d.120.1.0 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |automated matches |automated matches |Ostreococcus tauri virus 2 [TaxId: 696472]
d1g59a2 : (THR108) (ARG140) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutamyl-tRNA synthetase (GluRS) |Thermus thermophilus [TaxId: 274]
d3hsrb_ : (ASP65) (PHE142) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 426430]
d3o5ca1 : (VAL92) (PRO139) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d1diza1 : (VAL202) (PRO246) [view usage] : a.96.1.3 |DNA-glycosylase |DNA-glycosylase |DNA repair glycosylase, 2 C-terminal domains |3-Methyladenine DNA glycosylase II (gene alkA or aidA) |Escherichia coli [TaxId: 562]
d3kg2a1 : (ASP252) (VAL336) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1aora1 : (CYS494) (GLY542) [view usage] : a.110.1.1 |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase, C-terminal domains |Aldehyde ferredoxin oxidoreductase |Pyrococcus furiosus [TaxId: 2261]
d2q9ub1 : (TRP183) (SER219) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |Nitric oxide reductase N-terminal domain |Giardia intestinalis [TaxId: 5741]
d2q9ua1 : (TRP183) (THR220) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |Nitric oxide reductase N-terminal domain |Giardia intestinalis [TaxId: 5741]
d3n0xa_ : (PRO278) (ALA327) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
d4nqra_ : (GLY310) (GLY374) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Anabaena variabilis [TaxId: 240292]
d4ds7a_ : (THR6) (GLU55) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Kluyveromyces lactis [TaxId: 284590]
d4obba_ : (GLY310) (GLY374) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Anabaena variabilis [TaxId: 240292]
d3td9a_ : (PRO273) (THR326) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1do8a1 : (ASN467) (GLN509) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Mitochondrial NAD(P)-dependent malic enzyme |Human (Homo sapiens) [TaxId: 9606]
d3os4a2 : (HIS221) (GLY254) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1qnla_ : (PRO263) (ILE318) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
d2uy9a_ : (THR169) (SER192) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
d2fb1a1 : (PRO150) (MSE189) [view usage] : a.4.5.68 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Nudix-associated domain |Hypothetical protein BT0354, C-terminal domain |Bacteroides thetaiotaomicron [TaxId: 818]
d4gkib_ : (LEU236) (GLU269) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Acinetobacter baumannii [TaxId: 509173]
d1ci1b_ : (ASN132) (ARG162) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosoma cruzi [TaxId: 5693]
d1e6va2 : (ASP113) (TRP162) [view usage] : d.58.31.2 |Ferredoxin-like |Methyl-coenzyme M reductase subunits |Methyl-coenzyme M reductase alpha and beta chain N-terminal domain |Alpha chain |Methanopyrus kandleri [TaxId: 2320]
d3lf5a_ : (GLU93) (LEU121) [view usage] : d.120.1.0 |Cytochrome b5-like heme/steroid binding domain |Cytochrome b5-like heme/steroid binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3os4b2 : (HIS221) (GLY254) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d3c3da_ : (GLY72) (GLY121) [view usage] : c.143.1.1 |CofD-like |CofD-like |CofD-like |LPPG:FO 2-phospho-L-lactate transferase CofD |Methanosarcina mazei [TaxId: 2209]
d1vaja1 : (GLN149) (ASP178) [view usage] : d.309.1.1 |AMMECR1-like |AMMECR1-like |AMMECR1-like |Hypothetical protein PH0010 |Pyrococcus horikoshii [TaxId: 53953]
d3sajc_ : (PRO245) (VAL326) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3gwla_ : (CYS144) (TYR197) [view usage] : a.24.15.0 |Four-helical up-and-down bundle |FAD-dependent thiol oxidase |automated matches |automated matches |African swine fever virus ba71v [TaxId: 10498]
d2khna_ : (THR28) (LEU74) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4e0ha_ : (ASN131) (GLY186) [view usage] : a.24.15.0 |Four-helical up-and-down bundle |FAD-dependent thiol oxidase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2heta_ : (THR98) (HIS140) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Recoverin |Cow (Bos taurus) [TaxId: 9913]
d3caoa_ : (PRO58) (VAL101) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio africanus [TaxId: 873]
d2ggza_ : (TRP21) (THR62) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3w4yb_ : (ASN131) (LYS184) [view usage] : a.24.15.0 |Four-helical up-and-down bundle |FAD-dependent thiol oxidase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1dp4a_ : (PRO288) (MET352) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Hormone binding domain of the atrial natriuretic peptide receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3aaja_ : (GLN25) (PHE72) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dflw_ : (LYS15) (GLU62) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Essential Chain |Bay scallop (Aequipecten irradians) [TaxId: 31199]
d2uyba_ : (GLN167) (SER192) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
d1t34a_ : (PRO288) (ASN347) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Hormone binding domain of the atrial natriuretic peptide receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2hdxa_ : (TYR525) (VAL551) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1e5da2 : (PHE177) (ALA215) [view usage] : d.157.1.3 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |ROO N-terminal domain-like |Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain |Desulfovibrio gigas [TaxId: 879]
d1m8qb_ : (GLU94) (ALA138) [view usage] : i.15.1.1 |Muscle protein complexes |Muscle protein complexes |Muscle protein complexes |Averaged rigor crossbridges from tomograms of insect flight muscle |Chicken (Gallus gallus) and Rabbit (Oryctolagus cuniculus) [TaxId: 9031]
d1npdb1 : (THR239) (GLY285) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Putative shikimate dehydrogenase YdiB |Escherichia coli [TaxId: 562]
d3s0ma_ : (THR169) (SER192) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d1u25c_ : (SER264) (HIS331) [view usage] : c.45.1.4 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA |Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA |Selenomonas ruminantium [TaxId: 971]
d1l0lb1 : (TRP135) (ALA166) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Cytochrome bc1 core subunit 2 |Cow (Bos taurus) [TaxId: 9913]
d4ds7c_ : (THR6) (GLU55) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Kluyveromyces lactis [TaxId: 284590]
d1zpqb_ : (GLU9) (ILE40) [view usage] : a.35.1.9 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Bacteriophage CII protein |Regulatory protein cII |Bacteriophage lambda [TaxId: 10710]
d4gkhe_ : (LEU236) (GLU269) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Acinetobacter baumannii [TaxId: 509173]
d4p7fa_ : (THR47) (LYS89) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.2, d.58, c.26, d.157, c.66, c.93, c.45, a.127, d.144, d.185, i.15, a.96, a.4, a.39, a.138, a.3, d.93, a.24,
d.120, a.60, a.35, a.110, c.143, d.309