Tableau information
Concept source: d4q61b_ amino acid (a.a.) range (GLU54)(GLY84)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU54) (GLY71) H1
(GLY71) (GLY76) H2
(GLY76) (GLY84) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 89.2° H2
E3 139.8° -97.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2je6i1 : (PRO101) (VAL122) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of exosome complex RNA-binding protein 1, ECR1 |Sulfolobus solfataricus [TaxId: 2287]
d2bkra_ : (ALA40) (SER55) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1b75a_ : (VAL47) (ASP66) [view usage] : b.53.1.1 |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25 |Escherichia coli [TaxId: 562]
d1wbba4 : (THR11) (MET33) [view usage] : d.75.2.0 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2cfza2 : (GLY177) (PRO197) [view usage] : d.157.1.13 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Alkylsulfatase-like |Alkylsulfatase SdsA1 |Pseudomonas aeruginosa [TaxId: 287]
d2qqia1 : (SER443) (GLY490) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
d2y6za_ : (THR154) (TYR181) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1ebfa2 : (ALA221) (LEU246) [view usage] : d.81.1.2 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Homoserine dehydrogenase-like |Homoserine dehydrogenase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4a3ra2 : (SER214) (ALA244) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |automated matches |Bacillus subtilis [TaxId: 1423]
d1kska3 : (ARG2) (ASP30) [view usage] : d.66.1.5 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |Pseudouridine synthase RsuA N-terminal domain |Pseudouridine synthase RsuA N-terminal domain |Escherichia coli [TaxId: 562]
d1tg7a3 : (PRO952) (GLU972) [view usage] : b.18.1.27 |Galactose-binding domain-like |Galactose-binding domain-like |Beta-galactosidase LacA, domains 4 and 5 |Beta-galactosidase LacA, domains 4 and 5 |Penicillium sp. [TaxId: 5081]
d2zxja_ : (ARG196) (HIS232) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d3u5ce_ : (PRO43) (ASP73) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1q60a_ : (GLY7) (GLY48) [view usage] : d.288.1.1 |GTF2I-like repeat |GTF2I-like repeat |GTF2I-like repeat |General transcription factor II-I |Mouse (Mus musculus) [TaxId: 10090]
d1v29a_ : (THR193) (PRO215) [view usage] : d.149.1.1 |Nitrile hydratase alpha chain |Nitrile hydratase alpha chain |Nitrile hydratase alpha chain |Cobalt-containing nitrile hydratase |Bacillus smithii [TaxId: 1479]
d1iujb_ : (PRO69) (GLU96) [view usage] : d.58.4.5 |Ferredoxin-like |Dimeric alpha+beta barrel |PG130-like |Hypothetical protein TT1380 |Thermus thermophilus [TaxId: 274]
d4hgrf_ : (ASP79) (ASP103) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1yula_ : (LEU114) (PRO135) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1fltv_ : (ASP34) (PRO49) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |Vascular endothelial growth factor, VEGF |Human (Homo sapiens) [TaxId: 9606]
d1tc5c_ : (THR54) (PRO98) [view usage] : c.110.1.1 |DTD-like |DTD-like |DTD-like |probable eukaryotic D-amino acid tRNA deacylase |Leishmania major [TaxId: 5664]
d2e3la_ : (LEU8) (GLY48) [view usage] : d.288.1.0 |GTF2I-like repeat |GTF2I-like repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w4ma_ : (ASN39) (GLY74) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Pleckstrin |Human (Homo sapiens) [TaxId: 9606]
d1iyxa1 : (SER213) (ALA243) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Enterococcus hirae [TaxId: 1354]
d3ju8a_ : (SER223) (GLU245) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3pcoc2 : (ASP135) (PHE160) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3ct2a2 : (ILE185) (ASN202) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 220664]
d1m8q0_ : (TRP79) (ALA108) [view usage] : i.15.1.1 |Muscle protein complexes |Muscle protein complexes |Muscle protein complexes |Averaged rigor crossbridges from tomograms of insect flight muscle |Chicken (Gallus gallus) and Rabbit (Oryctolagus cuniculus) [TaxId: 9031]
d2dzra_ : (GLY7) (GLY48) [view usage] : d.288.1.0 |GTF2I-like repeat |GTF2I-like repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hgod_ : (ASP79) (ASP103) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d4ropa2 : (ASN219) (ALA248) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Synechococcus elongatus [TaxId: 269084]
d2fffb1 : (ASP337) (THR393) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1b, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1k4ka_ : (THR113) (ARG133) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Escherichia coli [TaxId: 562]
d1khub_ : (ASN385) (SER415) [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad1 |Human (Homo sapiens) [TaxId: 9606]
d4mitc_ : (TRP104) (GLY121) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Entamoeba histolytica [TaxId: 885315]
d4cava2 : (ASP314) (VAL359) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Aspergillus fumigatus [TaxId: 746128]
d1i8ba2 : (THR280) (HIS303) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Chalcone synthase |Alfalfa (Medicago sativa) [TaxId: 3879]
d3sg0a_ : (ILE303) (ASN350) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d1w6tb1 : (GLY214) (ALA244) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1sf8h_ : (GLY509) (LEU528) [view usage] : d.271.1.1 |HSP90 C-terminal domain |HSP90 C-terminal domain |HSP90 C-terminal domain |Chaperone protein HtpG |Escherichia coli [TaxId: 562]
d2d99a_ : (GLY7) (GLY48) [view usage] : d.288.1.0 |GTF2I-like repeat |GTF2I-like repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2d9ba_ : (VAL10) (GLY58) [view usage] : d.288.1.0 |GTF2I-like repeat |GTF2I-like repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ea0a1 : (THR1244) (ARG1269) [view usage] : b.80.4.1 |Single-stranded right-handed beta-helix |Alpha subunit of glutamate synthase, C-terminal domain |Alpha subunit of glutamate synthase, C-terminal domain |Alpha subunit of glutamate synthase, C-terminal domain |Azospirillum brasilense [TaxId: 192]
d2iuka2 : (THR408) (TYR435) [view usage] : a.119.1.1 |Lipoxigenase |Lipoxigenase |Plant lipoxigenases |automated matches |Soybean (Glycine max) [TaxId: 3847]
d4hhyd2 : (GLY182) (LEU198) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2yhea1 : (GLY187) (PRO207) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas sp. [TaxId: 1007495]
d1gkla_ : (VAL921) (ALA954) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Feruloyl esterase domain of the cellulosomal xylanase y |Clostridium thermocellum [TaxId: 1515]
d1fuia1 : (SER367) (ASN392) [view usage] : b.43.2.1 |Reductase/isomerase/elongation factor common domain |FucI/AraA C-terminal domain-like |L-fucose isomerase, C-terminal domain |L-fucose isomerase, C-terminal domain |Escherichia coli [TaxId: 562]
d1x0va1 : (ASP78) (VAL92) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j84a_ : (ASN73) (ALA95) [view usage] : b.18.1.12 |Galactose-binding domain-like |Galactose-binding domain-like |Family 17 carbohydrate binding module, CBM17 |Endo-1,4-beta glucanase EngF |Clostridium cellulovorans [TaxId: 1493]
d4n0qa_ : (ALA296) (ALA337) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Brucella melitensis [TaxId: 224914]
d1wb9a4 : (THR11) (MET33) [view usage] : d.75.2.1 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |Escherichia coli [TaxId: 562]
d1iica2 : (ILE269) (VAL316) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ju8b_ : (SER223) (GLU245) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3o8yb2 : (VAL262) (PHE286) [view usage] : a.119.1.0 |Lipoxigenase |Lipoxigenase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wbda4 : (THR11) (MET33) [view usage] : d.75.2.0 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1amya2 : (ARG55) (ASN91) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Plant alpha-amylase |Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId: 4513]
d2ejea_ : (SER14) (GLY62) [view usage] : d.288.1.0 |GTF2I-like repeat |GTF2I-like repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3v92b2 : (VAL262) (PHE286) [view usage] : a.119.1.0 |Lipoxigenase |Lipoxigenase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3vmfa1 : (LYS54) (LYS82) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d1rh8a_ : (SER4695) (SER4721) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Piccolo |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1e3ma4 : (THR11) (MSE33) [view usage] : d.75.2.1 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |Escherichia coli [TaxId: 562]
d2p02a2 : (LEU237) (GLN267) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Human (Homo sapiens), isoform type-2 [TaxId: 9606]
d3uj2a2 : (SER216) (ALA246) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Anaerostipes caccae [TaxId: 411490]
d1ek8a_ : (SER33) (VAL59) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Escherichia coli [TaxId: 562]
d2czra1 : (LEU161) (ASN186) [view usage] : c.52.4.1 |Restriction endonuclease-like |TBP-interacting protein-like |TBP-interacting protein-like |TBP-interacting protein |Thermococcus kodakaraensis [TaxId: 311400]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.3, c.1, a.119, c.69, c.2, d.58, i.1, c.108, c.82, c.26, d.157, c.93, b.40, c.37, d.104, i.15, d.166, c.95, b.18,
d.3, d.81, d.108, c.52, b.26, a.4, d.67, c.110, b.7, b.43, d.13, d.130, g.17, d.149, d.66, b.53, d.288, d.75, d.271