Tableau information
Concept source: d4jiea_ amino acid (a.a.) range (ASN206)(PRO252)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN206) (TYR233) H1
(TYR233) (LYS238) H2
(LYS238) (PRO252) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -61.7° H2
E3 -149.4° -94.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2itga_ : (GLY118) (GLY140) [view usage] : c.55.3.2 |Ribonuclease H-like motif |Ribonuclease H-like |Retroviral integrase, catalytic domain |Retroviral integrase, catalytic domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d2qgxd_ : (SER2) (LEU31) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ry9a_ : (ASP63) (ASP95) [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |Surface presentation of antigens protein SpaK (Spa15) |Shigella flexneri [TaxId: 623]
d1zuoa1 : (SER202) (LEU231) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2be7a2 : (SER214) (ARG229) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Moritella profunda [TaxId: 111291]
d3e8pa_ : (PRO14) (ARG43) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d1xqga_ : (THR102) (ASP120) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Maspin |Human (Homo sapiens) [TaxId: 9606]
d1llfa_ : (LEU73) (GLU95) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida cylindracea, cholesterol esterase [TaxId: 44322]
d2qgxb_ : (SER2) (LEU31) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1shna_ : (ASP182) (GLY201) [view usage] : c.76.1.1 |Alkaline phosphatase-like |Alkaline phosphatase-like |Alkaline phosphatase |Alkaline phosphatase |Northern shrimp (Pandalus borealis) [TaxId: 6703]
d3zn2b_ : (SER143) (TYR177) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 358]
d2hdoa1 : (SER113) (ALA130) [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |Phosphoglycolate phosphatase |Lactobacillus plantarum [TaxId: 1590]
d1n88a_ : (SER14) (TRP29) [view usage] : d.12.1.1 |Ribosomal proteins S24e, L23 and L15e |Ribosomal proteins S24e, L23 and L15e |L23p |Ribosomal protein L23 |Thermus thermophilus [TaxId: 274]
d1svva_ : (ASN306) (GLU322) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Low-specificity threonine aldolase |Leishmania major [TaxId: 5664]
d1ikpa3 : (PRO382) (TYR394) [view usage] : f.1.5.1 |Toxins' membrane translocation domains |Exotoxin A, middle domain |Exotoxin A, middle domain |Exotoxin A, middle domain |Pseudomonas aeruginosa [TaxId: 287]
d2km8c2 : (ALA294) (ARG317) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4c3za_ : (ALA800) (THR826) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k7ha_ : (ASP182) (GLY201) [view usage] : c.76.1.1 |Alkaline phosphatase-like |Alkaline phosphatase-like |Alkaline phosphatase |Alkaline phosphatase |Northern shrimp (Pandalus borealis) [TaxId: 6703]
d2piaa2 : (PHE155) (ASP173) [view usage] : c.25.1.2 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Aromatic dioxygenase reductase-like |Phthalate dioxygenase reductase |Pseudomonas cepacia, db01 [TaxId: 292]
d1jc9a_ : (PRO101) (ASN127) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Tachylectin 5a |Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
d3lyla_ : (GLN151) (PHE186) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Francisella tularensis [TaxId: 177416]
d3ucxa_ : (GLY154) (GLY187) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1dlia2 : (LEU31) (THR64) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |UDP-glucose dehydrogenase (UDPGDH) |Streptococcus pyogenes [TaxId: 1314]
d1ucra_ : (GLU3) (PHE24) [view usage] : a.4.5.45 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Dissimilatory sulfite reductase DsvD |Dissimilatory sulfite reductase DsvD |Desulfovibrio vulgaris [TaxId: 881]
d4knab_ : (SER222) (MET245) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d2ixea_ : (ALA652) (THR677) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3o6oa_ : (LEU188) (GLU208) [view usage] : d.122.1.1 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Heat shock protein 90, HSP90, N-terminal domain |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3dj3b_ : (THR89) (GLN112) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3hxab_ : (SER9) (GLY30) [view usage] : d.74.1.1 |DCoH-like |PCD-like |PCD-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2pgcc_ : (MSE172) (LYS204) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
d2ozka2 : (MET251) (ASP267) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |SARS coronavirus [TaxId: 227859]
d1zuob_ : (SER202) (LEU231) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1xhnb_ : (ASN97) (GLY118) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3mj0a_ : (PRO603) (PRO643) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3od7a_ : (SER120) (THR138) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Haemophilus influenzae [TaxId: 727]
d2hrba_ : (SER192) (GLY229) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4csja_ : (SER709) (PHE774) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h0hb_ : (PRO78) (ASP95) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Tungsten containing formate dehydrogenase, small subunit |Desulfovibrio gigas [TaxId: 879]
d1h8ya_ : (GLU129) (SER162) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-13 [TaxId: 287]
d4k8oa_ : (ALA651) (THR677) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1s6vb_ : (SER2) (GLU21) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Mitochondrial cytochrome c |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ikqa3 : (PRO382) (TYR394) [view usage] : f.1.5.1 |Toxins' membrane translocation domains |Exotoxin A, middle domain |Exotoxin A, middle domain |Exotoxin A, middle domain |Pseudomonas aeruginosa [TaxId: 287]
d2pgcb_ : (MSE172) (LYS204) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
d3ff1a_ : (TYR301) (HIS328) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |automated matches |Staphylococcus aureus [TaxId: 93062]
d2x0na2 : (ILE269) (ASP292) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Trypanosoma brucei brucei, glycosome [TaxId: 5702]
d2qgxc_ : (SER2) (LEU31) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bhma_ : (SER191) (GLY228) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Carbonyl reductase/20beta-hydroxysteroid dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1xs0c_ : (SER104) (HIS131) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Escherichia coli [TaxId: 562]
d2cbza_ : (ALA800) (THR826) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3lusa_ : (CYS124) (ASN141) [view usage] : d.227.1.0 |OsmC-like |OsmC-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d3nwva_ : (ASP2) (GLU21) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Mitochondrial cytochrome c |Human (Homo sapiens) [TaxId: 9606]
d1xs0a_ : (SER104) (SER130) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Escherichia coli [TaxId: 562]
d3h5oa_ : (LEU263) (ASN283) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, c.67, c.69, c.94, c.2, c.76, d.58, c.108, c.82, c.80, c.93, d.122, c.37, c.55, d.171, d.81, b.45, a.123, c.78,
d.20, d.38, c.25, e.1, b.34, a.4, a.3, f.1, d.74, d.227, b.36, d.198, d.12, d.233, d.294