Tableau information
Concept source: d4f1va_ amino acid (a.a.) range (ALA1242)(GLY1272)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA1242) (VAL1253) H1
(ASN1263) (VAL1268) H2
(VAL1268) (GLY1272) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 136.9° H2
E3 104.6° -60.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4f18a_ : (ALA1242) (GLY1272) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
d1vs6i1 : (PRO74) (ARG102) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Escherichia coli [TaxId: 562]
d1nuia1 : (ASN70) (LYS100) [view usage] : e.13.1.2 |DNA primase core |DNA primase core |Primase fragment of primase-helicase protein |Primase fragment of primase-helicase protein |Bacteriophage T7 [TaxId: 10760]
d1k9oi_ : (THR306) (ASN336) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Alaserpin (serpin 1) |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
d3d43b_ : (GLY168) (ASN194) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus sphaericus [TaxId: 1421]
d2jz3b_ : (THR56) (ASP82) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4lugb_ : (HIS34) (VAL53) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3i98e_ : (ASN2) (ILE21) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
d3u5eh_ : (SER150) (HIS183) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d4m1va_ : (ALA248) (ALA279) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Unidentified prokaryotic [TaxId: 2725]
d4jaxa2 : (ILE246) (ASN266) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Kluyveromyces lactis [TaxId: 284590]
d4f1va_ : (ALA1242) (GLY1272) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 216595]
d2bm8g_ : (PRO197) (ALA234) [view usage] : c.66.1.50 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CmcI-like |Cephalosporin hydroxylase CmcI |Streptomyces clavuligerus [TaxId: 1901]
d4luga_ : (HIS34) (VAL53) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4v19k_ : (THR86) (THR113) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d2cx7b_ : (ASP79) (LYS106) [view usage] : d.106.1.1 |SCP-like |SCP-like |Sterol carrier protein, SCP |automated matches |Thermus thermophilus [TaxId: 274]
d3q46a_ : (ASN2) (ILE21) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
d1mmsa1 : (PRO74) (THR101) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1seka_ : (THR306) (ASN336) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Serpin K |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
d3gxba_ : (THR1578) (VAL1607) [view usage] : c.62.1.0 |vWA-like |vWA-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2q9ta_ : (ALA242) (GLY272) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
d1hc8b_ : (PRO209) (ARG237) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, i.1, c.66, b.40, c.55, c.62, c.41, e.13, d.106, e.1, a.4, d.15