Tableau information
Concept source: d1d0na6 amino acid (a.a.) range (ASP690)(LYS721)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP690) (ALA696) H1
(ALA696) (ASP707) H2
(PRO716) (LYS721) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -57.0° H2
E3 -149.7° 139.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4p0ib_ : (ALA248) (LYS282) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2e54a_ : (GLY216) (ALA239) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2o06a_ : (GLY179) (GLN206) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Human (Homo sapiens) [TaxId: 9606]
d4p0ia_ : (ALA248) (LYS282) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2e5wa_ : (GLY167) (GLN194) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d2iecd_ : (SER38) (SER70) [view usage] : d.316.1.1 |MK0786-like |MK0786-like |MK0786-like |Hypothetical protein MK0786 |Methanopyrus kandleri [TaxId: 2320]
d2proc1 : (GLN22) (ILE53) [view usage] : d.52.1.1 |Alpha-lytic protease prodomain-like |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Lysobacter enzymogenes [TaxId: 69]
d3kksa_ : (GLY118) (GLY140) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Bovine immunodeficiency virus [TaxId: 417296]
d1i4wa_ : (PRO173) (ALA206) [view usage] : c.66.1.24 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA adenine dimethylase-like |Transcription factor sc-mtTFB |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1u0ea_ : (ILE156) (SER184) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Mouse (Mus musculus) [TaxId: 10090]
d2l4sa_ : (THR89) (VAL109) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xj5a_ : (GLY207) (GLN234) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2arha1 : (ARG74) (GLU100) [view usage] : d.108.1.9 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |Aq_1966-like |Hypothetical protein Aq_1966 |Aquifex aeolicus [TaxId: 63363]
d3f1la_ : (PRO114) (SER153) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1oc3a_ : (LEU52) (VAL75) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Peroxiredoxin 5 |Human (Homo sapiens) [TaxId: 9606]
d2ddrc_ : (LYS200) (GLY227) [view usage] : d.151.1.3 |DNase I-like |DNase I-like |Sphingomyelin phosphodiesterase-like |automated matches |Bacillus cereus [TaxId: 1396]
d2kxfa1 : (PRO163) (GLY186) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2orda_ : (GLY216) (ALA239) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2xuah_ : (TRP42) (ASP59) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
d4jaoa1 : (GLY137) (SER169) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1m33a_ : (TRP29) (ASP46) [view usage] : c.69.1.26 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Biotin biosynthesis protein BioH |Biotin biosynthesis protein BioH |Escherichia coli [TaxId: 562]
d2h1rb_ : (GLU122) (CYS153) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d4df3a_ : (ARG185) (LEU217) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d1bqba_ : (LYS61) (HIS102) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Aureolysin |Staphylococcus aureus [TaxId: 1280]
d2o06b_ : (GLY179) (GLN206) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Human (Homo sapiens) [TaxId: 9606]
d1pwea_ : (GLU267) (CYS303) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |L-serine dehydratase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1urma_ : (LEU52) (VAL75) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Peroxiredoxin 5 |Human (Homo sapiens) [TaxId: 9606]
d2xuaa_ : (TRP42) (ASP59) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
d2zsub_ : (ALA169) (GLN194) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1ffya2 : (ASP368) (SER393) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Staphylococcus aureus [TaxId: 1280]
d2bbea_ : (ASP81) (ALA108) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Shewanella oneidensis [TaxId: 211586]
d3j38b_ : (LEU184) (ILE215) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2ddsa_ : (LYS200) (GLY227) [view usage] : d.151.1.3 |DNase I-like |DNase I-like |Sphingomyelin phosphodiesterase-like |automated matches |Bacillus cereus [TaxId: 1396]
d2cexa_ : (TYR90) (SER120) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Sialic acid-binding protein SiaP |Haemophilus influenzae [TaxId: 727]
d1dp4a_ : (ALA111) (GLY127) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Hormone binding domain of the atrial natriuretic peptide receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3j38h_ : (GLN161) (PRO188) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1ghsa_ : (ASN251) (ALA275) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Plant beta-glucanases |Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]
d2o07b_ : (ALA181) (GLN206) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Human (Homo sapiens) [TaxId: 9606]
d4pe3a_ : (PHE235) (PRO253) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 349101]
d2hfva1 : (HIS73) (ASP96) [view usage] : d.58.5.5 |Ferredoxin-like |GlnB-like |RPA1041-like |Hypothetical protein RPA1041 |Rhodopseudomonas palustris [TaxId: 1076]
d2zsue_ : (VAL166) (GLN194) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1cu1a2 : (SER297) (ALA323) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |HCV helicase domain |Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
d3om8b_ : (TRP41) (ASP58) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d4o7mc_ : (MSE121) (ASN153) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Shewanella loihica [TaxId: 323850]
d1dbda_ : (PRO73) (THR95) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Bovine papillomavirus type 1 [TaxId: 10559]
d2fiub_ : (SER61) (VAL92) [view usage] : d.58.4.16 |Ferredoxin-like |Dimeric alpha+beta barrel |Atu0297-like |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2yjha_ : (THR58) (CYS82) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pseudotuberculosis [TaxId: 633]
d2zvic2 : (HIS341) (GLY361) [view usage] : c.1.14.0 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2fiua1 : (VAL62) (VAL92) [view usage] : d.58.4.16 |Ferredoxin-like |Dimeric alpha+beta barrel |Atu0297-like |Hypothetical protein Atu0297 |Agrobacterium tumefaciens [TaxId: 358]
d1vi7a2 : (PRO181) (ILE205) [view usage] : d.58.11.2 |Ferredoxin-like |EF-G C-terminal domain-like |YigZ C-terminal domain-like |Hypothetical protein YigZ, C-terminal domain |Escherichia coli [TaxId: 562]
d3alya_ : (SER77) (TRP115) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1ja1b2 : (ASP118) (GLY141) [view usage] : c.23.5.2 |Flavodoxin-like |Flavoproteins |Cytochrome p450 reductase N-terminal domain-like |NADPH-cytochrome p450 reductase, N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3l3ua_ : (GLY118) (GLY140) [view usage] : c.55.3.2 |Ribonuclease H-like motif |Ribonuclease H-like |Retroviral integrase, catalytic domain |Retroviral integrase, catalytic domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d1w5sa2 : (ALA157) (VAL185) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |CDC6-like protein APE0152, N-terminal domain |Aeropyrum pernix [TaxId: 56636]
d3om8a_ : (TRP41) (ASP58) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d3izbb_ : (ARG64) (ALA88) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1nnwa_ : (SER156) (ALA174) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |Hypothetical protein PF1291 |Pyrococcus furiosus [TaxId: 2261]
d1nnwb_ : (SER156) (ALA174) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |Hypothetical protein PF1291 |Pyrococcus furiosus [TaxId: 2261]
d1p5ja_ : (THR195) (SER247) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |L-serine dehydratase |Human (Homo sapiens) [TaxId: 9606]
d3futa_ : (LYS145) (PHE177) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.94, c.2, d.159, d.58, i.1, c.79, c.66, c.80, d.92, c.93, c.23, c.37, c.47, c.55, c.95, d.151, d.108,
d.109, b.51, b.36, d.52, d.316