Tableau information
Concept source: d1c77a_ amino acid (a.a.) range (LYS57)(SER84)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS57) (LEU68) H1
(THR71) (PHE76) H2
(VAL79) (SER84) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -128.3° H2
E3 117.4° -110.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3visb_ : (ASN254) (THR297) [view usage] : c.69.1.16 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Lipase |automated matches |Thermobifida alba [TaxId: 53522]
d1n4ob_ : (ASN132) (LYS174) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Stenotrophomonas maltophilia, L2 [TaxId: 40324]
d1b71a1 : (ARG8) (PRO76) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Rubrerythrin, N-terminal domain |Desulfovibrio vulgaris [TaxId: 881]
d3hu5a_ : (GLU68) (THR107) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d1c76a_ : (LYS57) (SER84) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d1jvsa3 : (ASP149) (SER185) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d1xhna1 : (ASN124) (THR159) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Cellular repressor of E1A-stimulated genes CREG1 |Human (Homo sapiens) [TaxId: 9606]
d3vr8b1 : (VAL68) (PRO125) [view usage] : d.15.4.0 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |automated matches |automated matches |Pig roundworm (Ascaris suum) [TaxId: 6253]
d1ryia2 : (ASP271) (LYS306) [view usage] : d.16.1.3 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |D-aminoacid oxidase-like |Glycine oxidase ThiO |Bacillus sp. [TaxId: 1409]
d1xq6a_ : (ALA206) (PRO232) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Hypothetical protein At5g02240 (T7H20_290) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2voua2 : (PRO256) (ALA291) [view usage] : d.16.1.2 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |PHBH-like |Dihydroxypyridine hydroxylase DhpH |Arthrobacter nicotinovorans [TaxId: 29320]
d1yq3b1 : (VAL44) (TYR100) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Succinate dehydogenase iron-sulfur protein, N-terminal domain |Chicken (Gallus gallus) [TaxId: 9031]
d1orda2 : (GLY414) (ASN494) [view usage] : c.67.1.5 |PLP-dependent transferase-like |PLP-dependent transferases |Ornithine decarboxylase major domain |Ornithine decarboxylase major domain |Lactobacillus sp., strain 30a [TaxId: 1591]
d3ls6a_ : (SER110) (ALA142) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |automated matches |Salmonella typhimurium [TaxId: 90371]
d1ai9a_ : (GLY55) (SER78) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Yeast (Candida albicans) [TaxId: 5476]
d3csea_ : (ARG56) (ARG79) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Candida glabrata [TaxId: 5478]
d1nmoa_ : (LYS2) (LYS32) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein YbgI |Escherichia coli [TaxId: 562]
d2dlda1 : (ASN105) (GLY153) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |D-lactate dehydrogenase |Lactobacillus helveticus [TaxId: 1587]
d1pvwa_ : (MET71) (HIS107) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |Methanocaldococcus jannaschii [TaxId: 2190]
d1c77a_ : (LYS57) (SER84) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d4d00c_ : (HIS55) (ARG80) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza virus a/jiangxi- donghu/346/2013 (h10n8) [TaxId: 11309]
d1wfxa_ : (LEU5) (ARG31) [view usage] : d.166.1.5 |ADP-ribosylation |ADP-ribosylation |Tpt1/KptA |Probable RNA 2'-phosphotransferase KptA |Aeropyrum pernix [TaxId: 56636]
d1wzea1 : (LEU20) (SER42) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Thermus thermophilus [TaxId: 274]
d2wmea_ : (PHE331) (THR375) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1l2fa2 : (GLU202) (GLU228) [view usage] : d.52.3.1 |Alpha-lytic protease prodomain-like |Prokaryotic type KH domain (KH-domain type II) |Prokaryotic type KH domain (KH-domain type II) |Transcription factor NusA, C-terminal domains |Thermotoga maritima [TaxId: 2336]
d2saka_ : (LYS57) (SER84) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d4d00a_ : (HIS55) (ARG80) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza virus a/jiangxi- donghu/346/2013 (h10n8) [TaxId: 11309]
d3zvxb_ : (SER112) (THR140) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Platypodium elegans [TaxId: 115002]
d2zc3b_ : (SER504) (ASP555) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 2x (pbp-2x), transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1vkoa2 : (VAL369) (LYS393) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |Myo-inositol 1-phosphate synthase |Nematode (Caenorhabditis elegans) [TaxId: 6239]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.67, b.19, c.69, c.2, b.29, c.82, c.135, d.166, d.81, c.71, b.45, a.25, c.33, d.15, d.16, d.52, d.115