Tableau information
Concept source: d2nxpa1 amino acid (a.a.) range (ARG311)(ASP343)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG311) (GLU323) H1
(GLN328) (GLN334) H2
(TYR338) (ASP343) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -139.5° H2
E3 -122.7° -86.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ix0a4 : (THR445) (ILE477) [view usage] : b.40.4.16 |OB-fold |Nucleic acid-binding proteins |RNB domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
d1zj8a2 : (GLY50) (GLU73) [view usage] : d.58.36.1 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |Duplicated SiR/NiR-like domains 1 and 3 |Sulfite reductase NirA |Mycobacterium tuberculosis [TaxId: 1773]
d1poca_ : (CYS61) (LEU98) [view usage] : a.133.1.1 |Phospholipase A2, PLA2 |Phospholipase A2, PLA2 |Insect phospholipase A2 |Phospholipase A2 |Honeybee (Apis mellifera) [TaxId: 7460]
d1z5fa_ : (ASP2) (PHE36) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Bullfrog (Rana catesbeiana) [TaxId: 8400]
d3vehb_ : (PHE112) (PRO137) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d1xeaa2 : (ARG123) (ALA155) [view usage] : d.81.1.5 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Glucose 6-phosphate dehydrogenase-like |Putative oxidoreductase VCA1048 |Vibrio cholerae [TaxId: 666]
d1cnea2 : (LEU183) (ASP205) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |Nitrate reductase |Maize (Zea mays) [TaxId: 4577]
d1o4wa_ : (THR46) (GLU84) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein AF0591 |Archaeoglobus fulgidus [TaxId: 2234]
d1awia_ : (THR43) (GLY66) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Human (Homo sapiens), isoform I [TaxId: 9606]
d1jqlb_ : (ALA124) (GLN140) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d1w4ma_ : (MET76) (PHE99) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Pleckstrin |Human (Homo sapiens) [TaxId: 9606]
d2j4bb_ : (ARG115) (PRO149) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |automated matches |Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
d1w8ia_ : (THR42) (ASP80) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein AF1683 |Archaeoglobus fulgidus [TaxId: 2234]
d4uaxa_ : (ASP11) (THR48) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1smva_ : (GLY164) (LEU187) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
d1lnza2 : (LEU213) (ILE244) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Obg GTP-binding protein middle domain |Bacillus subtilis [TaxId: 1423]
d2x06a_ : (ALA180) (GLY222) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase |Methanococcus jannaschii [TaxId: 2190]
d1pa4a_ : (LEU9) (SER41) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Mycoplasma pneumoniae [TaxId: 2104]
d1tuef_ : (HIS576) (ASN597) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication protein E1 helicase domain |Human papillomavirus type 18 [TaxId: 333761]
d1aira_ : (GLU60) (GLU86) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Erwinia chrysanthemi, type C [TaxId: 556]
d1c7na_ : (VAL218) (PRO236) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Cystalysin |Treponema denticola [TaxId: 158]
d2c3yb2 : (LYS787) (MET806) [view usage] : c.36.1.12 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |PFOR PP module |Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI |Desulfovibrio africanus [TaxId: 873]
d3nula_ : (LYS43) (GLN76) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1ph1b_ : (SER12) (TYR42) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Core domain of telomere end binding protein beta subunit |Oxytricha nova [TaxId: 200597]
d1cf3a2 : (THR488) (GLY519) [view usage] : d.16.1.1 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GMC oxidoreductases |Glucose oxidase |Aspergillus niger [TaxId: 5061]
d1otcb_ : (SER12) (TYR42) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Core domain of telomere end binding protein beta subunit |Oxytricha nova [TaxId: 200597]
d1o88a_ : (GLU60) (GLU86) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Erwinia chrysanthemi, type C [TaxId: 556]
d1jb7b_ : (SER12) (TYR42) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Core domain of telomere end binding protein beta subunit |Oxytricha nova [TaxId: 200597]
d3s4ya1 : (GLY47) (ASP71) [view usage] : c.100.1.1 |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Thiamin pyrophosphokinase, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2j4bd_ : (ARG115) (GLY148) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |automated matches |Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
d2i4rb_ : (LYS52) (VAL78) [view usage] : c.149.1.1 |AtpF-like |AtpF-like |AtpF-like |V-type ATP synthase subunit F, AtpF |Archaeoglobus fulgidus [TaxId: 2234]
d3logb_ : (GLU113) (PRO137) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d3logd_ : (ALA111) (PRO137) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d2j4bc_ : (ARG115) (GLY148) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |automated matches |Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
d4go9b1 : (HIS109) (ASP131) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Pseudomonas mesoacidophila [TaxId: 265293]
d1jqjd2 : (ALA124) (THR141) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d4sbva_ : (GLN165) (LEU187) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SBMV (Southern bean mosaic virus), cow pea strain [TaxId: 12139]
d2jd5b_ : (ASP192) (ASP230) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ivda2 : (PRO372) (ARG407) [view usage] : d.16.1.5 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |L-aminoacid/polyamine oxidase |Protoporphyrinogen oxidase |Myxococcus xanthus [TaxId: 34]
d1fnna2 : (ASP168) (SER190) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |CDC6, N-domain |Pyrobaculum aerophilum [TaxId: 13773]
d2i4ra1 : (LYS52) (GLY79) [view usage] : c.149.1.1 |AtpF-like |AtpF-like |AtpF-like |V-type ATP synthase subunit F, AtpF |Archaeoglobus fulgidus [TaxId: 2234]
d2j49a1 : (SER247) (VAL282) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |TAF5 subunit of TFIID |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1w5sa2 : (ASP188) (ALA214) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |CDC6-like protein APE0152, N-terminal domain |Aeropyrum pernix [TaxId: 56636]
d1zgha1 : (LYS166) (GLY201) [view usage] : b.46.1.1 |FMT C-terminal domain-like |FMT C-terminal domain-like |Post formyltransferase domain |Methionyl-tRNAfmet formyltransferase, C-terminal domain |Clostridium thermocellum [TaxId: 1515]
d1jqjc2 : (ALA124) (THR141) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d2j4be_ : (ARG115) (VAL147) [view usage] : d.379.1.1 |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |Taf5 N-terminal domain-like |automated matches |Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
d1x36a_ : (GLY172) (LEU195) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |automated matches |SMV (Sesbania mosaic virus) [TaxId: 12558]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.67, a.104, d.58, d.144, b.40, c.37, c.36, b.121, d.81, d.110, c.25, c.122, c.120, a.4, d.5, d.16, a.133, c.100,
d.52, c.149, d.379, d.161, b.46