Tableau information
Concept source: d3irra_ amino acid (a.a.) range (THR157)(ALA189)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR157) (GLY166) H1
(LYS169) (GLY183) H2
(LEU185) (ALA189) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 119.2° H2
E3 -133.7° -107.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1b59a1 : (ARG417) (PRO446) [view usage] : a.4.5.25 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Methionine aminopeptidase, insert domain |Methionine aminopeptidase, insert domain |Human (Homo sapiens) [TaxId: 9606]
d1clca1 : (ILE234) (LYS270) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |CelD cellulase, C-terminal domain |Clostridium thermocellum [TaxId: 1515]
d4gwoa_ : (THR296) (LYS324) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Salmonella enterica [TaxId: 99287]
d1muwa_ : (HIS53) (PRO86) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces olivochromogenes [TaxId: 1963]
d1aw1a_ : (VAL152) (PRO170) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Vibrio marinus [TaxId: 90736]
d1trea_ : (VAL152) (PRO170) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Escherichia coli [TaxId: 562]
d1h12a_ : (ASN19) (GLU55) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Endo-1,4-beta-xylanase |Pseudoalteromonas haloplanktis [TaxId: 228]
d1jeca1 : (ASP11) (THR38) [view usage] : b.122.1.3 |PUA domain-like |PUA domain-like |ATP sulfurylase N-terminal domain |ATP sulfurylase N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1a7lb_ : (ASN118) (ASN150) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1j70a1 : (ASP11) (PRO39) [view usage] : b.122.1.3 |PUA domain-like |PUA domain-like |ATP sulfurylase N-terminal domain |ATP sulfurylase N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1xvya_ : (GLY139) (LYS173) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Serratia marcescens, SfuA [TaxId: 615]
d1i60a_ : (LYS38) (ALA64) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Hypothetical protein IolI |Bacillus subtilis [TaxId: 1423]
d1j70c1 : (ASP11) (THR38) [view usage] : b.122.1.3 |PUA domain-like |PUA domain-like |ATP sulfurylase N-terminal domain |ATP sulfurylase N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2chcb_ : (ALA139) (SER166) [view usage] : d.17.4.25 |Cystatin-like |NTF2-like |Rv3472-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1i2da1 : (ASP12) (GLU38) [view usage] : b.122.1.3 |PUA domain-like |PUA domain-like |ATP sulfurylase N-terminal domain |ATP sulfurylase N-terminal domain |Fungus (Penicillium chrysogenum) [TaxId: 5076]
d3b76a_ : (GLU469) (GLU498) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ynia1 : (PRO239) (ARG257) [view usage] : d.126.1.7 |Pentein, beta/alpha-propeller |Pentein |Succinylarginine dihydrolase-like |Succinylarginine dihydrolase |Escherichia coli [TaxId: 562]
d3s55d_ : (THR214) (PRO244) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1siqa2 : (SER113) (LEU135) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Glutaryl-CoA dehydrogenase GCDH |Human (Homo sapiens) [TaxId: 9606]
d1lvwb_ : (VAL181) (LEU214) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d4ho4a_ : (VAL181) (GLY216) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Aneurinibacillus thermoaerophilus [TaxId: 143495]
d2chca1 : (ALA139) (ASP167) [view usage] : d.17.4.25 |Cystatin-like |NTF2-like |Rv3472-like |Uncharacterized protein Rv3472 |Mycobacterium tuberculosis [TaxId: 1773]
d1lvwa_ : (VAL181) (LEU214) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3qa3e_ : (THR185) (GLY207) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d1m1la_ : (CYS204) (MET238) [view usage] : d.260.1.1 |Suppressor of Fused, N-terminal domain |Suppressor of Fused, N-terminal domain |Suppressor of Fused, N-terminal domain |Suppressor of Fused, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1zrha_ : (TRP59) (LYS86) [view usage] : c.37.1.5 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |PAPS sulfotransferase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g8fa1 : (ASP11) (THR38) [view usage] : b.122.1.3 |PUA domain-like |PUA domain-like |ATP sulfurylase N-terminal domain |ATP sulfurylase N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jj7a_ : (PRO568) (GLY585) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Peptide transporter Tap1, C-terminal ABC domain |Human (Homo sapiens) [TaxId: 9606]
d3od7a_ : (SER139) (LYS174) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Haemophilus influenzae [TaxId: 727]
d1o1ha_ : (HIS53) (PRO86) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces rubiginosus [TaxId: 1929]
d1xwta1 : (LEU20) (GLU55) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Endo-1,4-beta-xylanase |Pseudoalteromonas haloplanktis [TaxId: 228]
d1al3a_ : (THR296) (LYS324) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Cofactor-binding fragment of LysR-type protein CysB |Klebsiella aerogenes [TaxId: 28451]
d3lwbb2 : (VAL263) (PRO287) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1exna2 : (LEU79) (ARG125) [view usage] : c.120.1.2 |PIN domain-like |PIN domain-like |5' to 3' exonuclease catalytic domain |T5 5'-exonuclease |Bacteriophage T5 [TaxId: 10726]
d3qa3g_ : (THR185) (GLY207) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d1djna2 : (TYR567) (ASP591) [view usage] : c.3.1.1 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |C-terminal domain of adrenodoxin reductase-like |Trimethylamine dehydrogenase, C-terminal domain |Methylophilus methylotrophus, w3a1 [TaxId: 17]
d1buya_ : (ARG10) (LYS45) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Erythropoietin |Human (Homo sapiens) [TaxId: 9606]
d2akja3 : (THR442) (THR472) [view usage] : d.134.1.1 |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Ferredoxin--nitrite reductase, NIR |Spinach (Spinacia oleracea) [TaxId: 3562]
d4lnca_ : (HIS54) (PRO87) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces rubiginosus [TaxId: 1929]
d2guba_ : (HIS54) (PRO87) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |automated matches |Streptomyces rubiginosus [TaxId: 1929]
d3qa3i_ : (THR185) (GLY207) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |Human (Homo sapiens) [TaxId: 9606]
d4bfld1 : (TRP304) (PRO342) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase II |Escherichia coli, HPII [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.5, c.1, c.94, c.2, c.68, a.102, c.37, e.6, c.62, b.122, d.126, d.17, c.120, d.134, d.142, a.4, c.3, a.26, b.36, d.260