Tableau information
Concept source: d1reqd1 amino acid (a.a.) range (ILE202)(ALA238)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ILE202) (GLN208) H1
(ASP213) (ALA225) H2
(ALA233) (ALA238) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 135.3° H2
E3 50.9° -134.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1p71a_ : (LYS3) (VAL45) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |HU protein |Anabaena sp. [TaxId: 1167]
d1m21a_ : (ASP49) (ASP94) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Peptide amidase Pam |Stenotrophomonas maltophilia [TaxId: 40324]
d1huuc_ : (LYS3) (ILE45) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |HU protein |Bacillus stearothermophilus [TaxId: 1422]
d2i9da_ : (CYS35) (ASP81) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1huea_ : (GLU5) (ILE45) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |HU protein |Bacillus stearothermophilus [TaxId: 1422]
d1huub_ : (LYS3) (LEU44) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |HU protein |Bacillus stearothermophilus [TaxId: 1422]
d2gwfc_ : (THR231) (TRP261) [view usage] : c.46.1.4 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Ubiquitin carboxyl-terminal hydrolase 8, USP8 |Ubiquitin carboxyl-terminal hydrolase 8, USP8 |Human (Homo sapiens) [TaxId: 9606]
d1gaxa2 : (PRO306) (ASP336) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Valyl-tRNA synthetase (ValRS) |Thermus thermophilus [TaxId: 274]
d4gidc_ : (LYS286) (GLN319) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1u7xa_ : (ASP2) (GLY34) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Methanococcus jannaschii [TaxId: 2190]
d1lqtb1 : (ASP235) (LEU272) [view usage] : c.3.1.1 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |C-terminal domain of adrenodoxin reductase-like |Ferredoxin:NADP reductase FprA |Mycobacterium tuberculosis [TaxId: 1773]
d2y42b_ : (GLY42) (SER71) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Thermus thermophilus [TaxId: 274]
d1w8ia_ : (ASP80) (TYR120) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein AF1683 |Archaeoglobus fulgidus [TaxId: 2234]
d2ebfx2 : (LYS964) (GLY1000) [view usage] : c.150.1.2 |EreA/ChaN-like |EreA/ChaN-like |PMT domain-like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d1ncla_ : (LYS49) (GLY84) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d1u55b_ : (PRO83) (PRO121) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d1j36a_ : (ASP424) (GLU487) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme, ACE |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2a7kh_ : (CYS138) (ALA166) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Carbapenem biosynthes protein CarB |Pectobacterium carotovorum [TaxId: 554]
d1vica_ : (THR205) (LEU229) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase |Haemophilus influenzae [TaxId: 727]
d3kqfb_ : (GLY146) (SER171) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3kvla_ : (PHE37) (GLY97) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydroorotate dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1y4zb1 : (GLU151) (CYS184) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Respiratory nitrate reductase 1 beta chain |Escherichia coli [TaxId: 562]
d3rhic_ : (THR4) (ILE45) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |automated matches |Bacillus anthracis [TaxId: 260799]
d3lmsa_ : (ASN112) (SER159) [view usage] : c.56.5.0 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dksb_ : (PRO25) (PRO72) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |CksHs1 |Human (Homo sapiens) [TaxId: 9606]
d1h7ea_ : (SER192) (GLU216) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase |Escherichia coli, KpsU [TaxId: 562]
d1g8jc2 : (SER345) (GLU384) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d3b55a_ : (ASN132) (ASP172) [view usage] : c.150.1.3 |EreA/ChaN-like |EreA/ChaN-like |EreA-like |Succinoglycan biosynthesis protein BC3120 |Bacillus cereus [TaxId: 1396]
d1s9ha_ : (ILE293) (GLY334) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Rep 40 protein helicase domain |Adeno-associated virus 2, AAV2 [TaxId: 10804]
d1gqca_ : (SER192) (GLU216) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase |Escherichia coli, KpsU [TaxId: 562]
d1huua_ : (LYS3) (ILE45) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |HU protein |Bacillus stearothermophilus [TaxId: 1422]
d4qjna_ : (LYS3) (ILE45) [view usage] : a.55.1.0 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d2vkda1 : (ILE201) (ILE240) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Cytotoxin L |Clostridium sordellii [TaxId: 1505]
d2a7lb_ : (ARG-2) (LYS28) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin-protein ligase W (E2 W) |Human (Homo sapiens) [TaxId: 9606]
d1dktb_ : (PRO25) (PRO72) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |CksHs1 |Human (Homo sapiens) [TaxId: 9606]
d4pt4a_ : (LYS3) (THR45) [view usage] : a.55.1.0 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2hg6a1 : (ILE77) (LEU105) [view usage] : d.364.1.1 |PA1123-like |PA1123-like |PA1123-like |Hypothetical protein PA1123 |Pseudomonas aeruginosa [TaxId: 287]
d3reqb1 : (PRO201) (ALA238) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase beta subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d1obka_ : (SER3) (SER45) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.81, d.58, c.68, c.26, c.56, c.117, d.92, c.77, c.14, b.50, c.37, d.20, c.43, d.278, c.120, c.3, a.55, c.46, b.51,
c.150, d.97, d.364