Tableau information
Concept source: d2r3ba_ amino acid (a.a.) range (GLN154)(SER188)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN154) (LEU160) H1
(THR169) (LEU180) H2
(SER182) (SER188) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 55.7° H2
E3 -145.0° 146.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4gria1 : (ALA215) (PRO243) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Borrelia burgdorferi [TaxId: 224326]
d3fqaa_ : (GLY1250) (LYS1273) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Synechococcus elongatus [TaxId: 269084]
d3fq8a_ : (GLY1250) (LYS1273) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Synechococcus elongatus [TaxId: 269084]
d4k57a_ : (ILE142) (PRO173) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Thermus thermophilus [TaxId: 262724]
d1dysa_ : (ASN183) (ASN219) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6b [TaxId: 34413]
d1p7gh2 : (LYS110) (LEU144) [view usage] : d.44.1.1 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe superoxide dismutase (FeSOD) |Pyrobaculum aerophilum [TaxId: 13773]
d2vzea_ : (ILE164) (SER184) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2zhxa_ : (GLY169) (GLU188) [view usage] : c.18.1.0 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4puca_ : (ASN269) (PRO288) [view usage] : a.118.8.6 |alpha-alpha superhelix |TPR-like |SusD-like |automated matches |Bacteroides uniformis [TaxId: 411479]
d1vg9a2 : (THR512) (SER554) [view usage] : d.16.1.6 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GDI-like |Rab escort protein 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2proa1 : (PRO6) (GLU57) [view usage] : d.52.1.1 |Alpha-lytic protease prodomain-like |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Lysobacter enzymogenes [TaxId: 69]
d1phza1 : (ASP84) (ARG111) [view usage] : d.58.18.3 |Ferredoxin-like |ACT-like |Phenylalanine metabolism regulatory domain |Phenylalanine hydroxylase N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3h07a_ : (THR4) (ASP33) [view usage] : d.115.1.2 |YrdC/RibB |YrdC/RibB |3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |automated matches |Yersinia pestis [TaxId: 214092]
d1fnma5 : (PRO648) (PHE672) [view usage] : d.58.11.1 |Ferredoxin-like |EF-G C-terminal domain-like |EF-G/eEF-2 domains III and V |Elongation factor G (EF-G) |Thermus thermophilus [TaxId: 274]
d2hoza_ : (GLY1250) (LYS1273) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Synechococcus elongatus [TaxId: 269084]
d2y7rc_ : (GLN247) (PRO263) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Burkholderia sp. [TaxId: 233098]
d2zosb_ : (VAL96) (TYR115) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d2xzm3_ : (ARG160) (PHE186) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4blva_ : (LEU249) (SER275) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1sr8a_ : (LEU257) (ILE282) [view usage] : e.54.1.1 |CbiD-like |CbiD-like |CbiD-like |Cobalamin biosynthesis protein CbiD |Archaeoglobus fulgidus [TaxId: 2234]
d1wzcb_ : (VAL96) (TYR115) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) |Pyrococcus horikoshii [TaxId: 53953]
d1fjeb1 : (SER63) (LYS87) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Nucleolin |Golden hamster (Mesocricetus auratus) [TaxId: 10036]
d4erib_ : (LEU192) (GLY227) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d4c5ja_ : (ASN139) (GLY178) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d2c6qa_ : (GLY268) (GLU294) [view usage] : c.1.5.0 |TIM beta/alpha-barrel |Inosine monophosphate dehydrogenase (IMPDH) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w85b1 : (VAL89) (PRO117) [view usage] : c.36.1.7 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase Pyr module |Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d1gpja3 : (SER56) (GLY78) [view usage] : d.58.39.1 |Ferredoxin-like |Glutamyl tRNA-reductase catalytic, N-terminal domain |Glutamyl tRNA-reductase catalytic, N-terminal domain |Glutamyl tRNA-reductase catalytic, N-terminal domain |Methanopyrus kandleri [TaxId: 2320]
d2as0a2 : (SER127) (ASN155) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein PH1915, middle and C-terminal domains |Pyrococcus horikoshii [TaxId: 53953]
d2ks4a_ : (ASP9) (GLU39) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |automated matches |Sea anemone (Stichodactyla helianthus) [TaxId: 6123]
d1nvmb2 : (GLY165) (PRO200) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Acetaldehyde dehydrogenase (acylating) |Pseudomonas sp. [TaxId: 306]
d3j38d_ : (THR57) (ALA90) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3u5cd_ : (THR55) (ASP93) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2ba0b3 : (VAL147) (GLN173) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Exosome complex RNA-binding protein 1, ECR1 |Archaeoglobus fulgidus [TaxId: 2234]
d1veha_ : (ASP12) (ARG40) [view usage] : d.52.8.1 |Alpha-lytic protease prodomain-like |Fe-S cluster assembly (FSCA) domain-like |NifU C-terminal domain-like |HIRA-interacting protein 5, HIRIP5 |Mouse (Mus musculus) [TaxId: 10090]
d2vzec_ : (ILE164) (SER184) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kkga_ : (ASP61) (SER102) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Escherichia coli [TaxId: 562]
d4loib_ : (SER154) (LEU204) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d1e3ma3 : (ILE206) (ARG262) [view usage] : c.55.6.1 |Ribonuclease H-like motif |DNA repair protein MutS, domain II |DNA repair protein MutS, domain II |DNA repair protein MutS, domain II |Escherichia coli [TaxId: 562]
d2bhpa_ : (ILE142) (PRO173) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1qwia_ : (PHE36) (ASP87) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Osmotically inducible protein OsmC |Escherichia coli [TaxId: 562]
d3tjta2 : (SER128) (LEU162) [view usage] : d.44.1.0 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d1ng9a3 : (ILE206) (ARG262) [view usage] : c.55.6.1 |Ribonuclease H-like motif |DNA repair protein MutS, domain II |DNA repair protein MutS, domain II |DNA repair protein MutS, domain II |Escherichia coli [TaxId: 562]
d1uzba_ : (ILE142) (PRO173) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |1-pyrroline-5-carboxylate dehydrogenase |Thermus thermophilus [TaxId: 274]
d3vd3a3 : (MET542) (ASP569) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d1i13a_ : (LEU51) (SER81) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine PRTase |Trypanosoma cruzi [TaxId: 5693]
d3u5ch_ : (LEU67) (ARG97) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d4pucb_ : (PRO270) (PRO288) [view usage] : a.118.8.6 |alpha-alpha superhelix |TPR-like |SusD-like |automated matches |Bacteroides uniformis [TaxId: 411479]
d1qveb_ : (GLU27) (THR61) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |Pilin P1 |Pseudomonas aeruginosa [TaxId: 287]
d1m32b_ : (PHE172) (SER190) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |2-aminoethylphosphonate transaminase |Salmonella typhimurium [TaxId: 90371]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, c.6, d.58, i.1, a.118, c.108, c.82, c.26, c.66, c.72, c.36, c.18, c.55, d.81, e.23, c.61, b.97, d.44,
d.16, d.227, d.24, d.52, d.51, d.387, d.115, e.54