Tableau information
Concept source: d2j4zb_ amino acid (a.a.) range (PHE165)(ALA203)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE165) (GLY173) H1
(HIS176) (LEU188) H2
(LEU194) (ALA203) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 119.5° H2
E3 -90.1° -145.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4be4a_ : (ALA481) (GLN510) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Ophiostoma piceae [TaxId: 61273]
d1xk7a_ : (ALA380) (GLU404) [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB |Escherichia coli [TaxId: 562]
d2gg6a_ : (ALA426) (SER450) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d4dc9d_ : (THR214) (ALA260) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |DNA repair protein Rad51, catalytic domain |Methanococcus voltae [TaxId: 2188]
d1vs6i1 : (ARG102) (ASP141) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Escherichia coli [TaxId: 562]
d1hzja_ : (SER132) (TYR185) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
d2vo9a1 : (THR4) (VAL45) [view usage] : d.65.1.5 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |VanY-like |L-alanyl-D-glutamate peptidase Ply |Listeria phage A500 [TaxId: 40522]
d2zu0c_ : (ASP66) (PHE84) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1nw3a_ : (PRO49) (ASN99) [view usage] : c.66.1.31 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Catalytic, N-terminal domain of histone methyltransferase Dot1l |Catalytic, N-terminal domain of histone methyltransferase Dot1l |Human (Homo sapiens) [TaxId: 9606]
d2d3wa_ : (ASP66) (ALA83) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2yhka_ : (CYS218) (GLY255) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |automated matches |Citrobacter freundii [TaxId: 546]
d2h0va_ : (GLY121) (ASP165) [view usage] : b.82.1.5 |Double-stranded beta-helix |RmlC-like cupins |Quercetin 2,3-dioxygenase-like |automated matches |Bacillus subtilis [TaxId: 1423]
d3rysa_ : (GLN60) (GLN105) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]
d2k1za_ : (SER74) (SER110) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4fc6b_ : (THR166) (PRO210) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cgpa1 : (ARG169) (VAL205) [view usage] : a.4.5.4 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CAP C-terminal domain-like |Catabolite gene activator protein (CAP), C-terminal domain |Escherichia coli [TaxId: 562]
d2fyga1 : (ASN10) (ASN40) [view usage] : g.86.1.1 |Coronavirus NSP10-like |Coronavirus NSP10-like |Coronavirus NSP10-like |Nonstructural protein 10, NSP10 |SARS coronavirus [TaxId: 227859]
d3zbwa_ : (ARG5) (ILE46) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3ximc_ : (GLU217) (ASN247) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Actinoplanes missouriensis [TaxId: 1866]
d2huta_ : (ASP87) (HIS112) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
d1gz7a_ : (GLY461) (THR491) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida rugosa, lipase 2 isoform [TaxId: 5481]
d1y3ta1 : (HIS125) (PHE163) [view usage] : b.82.1.5 |Double-stranded beta-helix |RmlC-like cupins |Quercetin 2,3-dioxygenase-like |Hypothetical protein YxaG |Bacillus subtilis [TaxId: 1423]
d1y3ta1 : (GLY293) (VAL334) [view usage] : b.82.1.5 |Double-stranded beta-helix |RmlC-like cupins |Quercetin 2,3-dioxygenase-like |Hypothetical protein YxaG |Bacillus subtilis [TaxId: 1423]
d2yaca_ : (PRO85) (ASN123) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xuua2 : (ILE26) (ILE58) [view usage] : c.1.10.6 |TIM beta/alpha-barrel |Aldolase |NeuB-like |Capsule biosynthesis protein SiaC, N-terminal domain |Neisseria meningitidis [TaxId: 487]
d1xaca_ : (GLY42) (PRO75) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Chimera (Thermus thermophilus) and (Bacillus subtilis) [TaxId: 274]
d3fc2a_ : (PRO85) (ASN123) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3r3qa_ : (PRO10) (ARG48) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3hl2b_ : (ASN253) (SER281) [view usage] : c.67.1.9 |PLP-dependent transferase-like |PLP-dependent transferases |SepSecS-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1smaa3 : (ARG427) (TYR456) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Maltogenic amylase, central domain |Thermus sp. [TaxId: 275]
d2go9a2 : (VAL129) (SER157) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |U4/U6 snRNA-associated-splicing factor PRP24 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1dxia_ : (GLU217) (GLY248) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces murinus [TaxId: 33900]
d1ek6b_ : (SER132) (TYR185) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
d2owba_ : (PRO85) (ASN123) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g8jc2 : (GLU384) (HIS423) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d1mmsa1 : (THR101) (VAL140) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d3zbwb_ : (ARG5) (ILE46) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2xyqb_ : (THR12) (ASN40) [view usage] : g.86.1.1 |Coronavirus NSP10-like |Coronavirus NSP10-like |Coronavirus NSP10-like |automated matches |SARS coronavirus [TaxId: 227859]
d2ggda_ : (ALA426) (SER450) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d2enia_ : (ASP87) (HIS112) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
d4emba_ : (ASN102) (MSE127) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d1xk6a1 : (ASP377) (GLU404) [view usage] : c.123.1.1 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB |Escherichia coli [TaxId: 562]
d1ti2b2 : (CYS129) (LYS158) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Transhydroxylase beta subunit, BthL, N-terminal domain |Pelobacter acidigallici [TaxId: 35816]
d1dxya1 : (TYR262) (PRO294) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |D-2-hydroxyisocaproate dehydrogenase |Lactobacillus casei [TaxId: 1582]
d2hbwa2 : (SER89) (PRO142) [view usage] : d.3.1.16 |Cysteine proteinases |Cysteine proteinases |NlpC/P60 |automated matches |Anabaena variabilis [TaxId: 240292]
d1ovad_ : (ALA150) (LYS191) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Ovalbumin |Chicken (Gallus gallus) [TaxId: 9031]
d2p90a1 : (GLY157) (PRO202) [view usage] : c.56.8.1 |Phosphorylase/hydrolase-like |Cgl1923-like |Cgl1923-like |Hypothetical protein Cgl1923 |Corynebacterium glutamicum [TaxId: 1718]
d3r24b_ : (HIS9) (ASN40) [view usage] : g.86.1.1 |Coronavirus NSP10-like |Coronavirus NSP10-like |Coronavirus NSP10-like |automated matches |SARS coronavirus [TaxId: 227859]
d1hc8b_ : (ARG237) (GLU275) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.123, b.82, c.67, c.69, c.81, d.68, c.2, d.58, c.90, c.56, c.66, c.77, d.144, c.37, d.3, c.60, d.20, e.1, a.4,
d.5, d.65, b.36, g.86