Tableau information
Concept source: d1u4ha_ amino acid (a.a.) range (LEU91)(PRO121)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU91) (MSE98) H1
(MSE98) (LYS110) H2
(GLY111) (PRO121) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -34.7° H2
E3 -139.2° -166.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2c49b_ : (GLY66) (GLU93) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d3a9wb_ : (GLY177) (LEU199) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma volcanium [TaxId: 50339]
d2bp7b1 : (ILE96) (PRO120) [view usage] : c.36.1.7 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase Pyr module |automated matches |Pseudomonas putida [TaxId: 303]
d1ufla_ : (SER66) (LEU94) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Thermus thermophilus [TaxId: 274]
d2veia_ : (THR44) (GLN65) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3q83a_ : (ASP79) (SER119) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Staphylococcus aureus [TaxId: 93062]
d1v7ca_ : (PHE134) (ASN154) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Thermus thermophilus [TaxId: 274]
d1rzub_ : (GLY18) (PRO42) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Agrobacterium tumefaciens [TaxId: 358]
d4a72b_ : (ILE344) (GLY377) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d4ib2b_ : (GLU247) (PHE277) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ruminococcus gnavus [TaxId: 411470]
d4fyja_ : (TYR68) (ASP98) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2c4ea_ : (GLY66) (GLU93) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d6abpa_ : (ASN232) (SER255) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |L-arabinose-binding protein |Escherichia coli [TaxId: 562]
d1ab7a_ : (GLY66) (SER89) [view usage] : c.9.1.1 |Barstar-like |Barstar-related |Barstar-related |Barstar (barnase inhibitor) |Bacillus amyloliquefaciens [TaxId: 1390]
d2v78a_ : (GLU60) (ASN83) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d1xiqa_ : (LYS82) (SER119) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
d1krha1 : (GLY179) (SER203) [view usage] : b.43.4.2 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Ferredoxin reductase FAD-binding domain-like |Benzoate dioxygenase reductase |Acinetobacter sp. [TaxId: 472]
d3rmtc_ : (LYS25) (GLY46) [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d1ncla_ : (GLY86) (SER126) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d1rqua2 : (SER99) (LYS120) [view usage] : d.45.1.1 |ClpS-like |ClpS-like |Ribosomal protein L7/12, C-terminal domain |Ribosomal protein L7/12, C-terminal domain |Escherichia coli [TaxId: 562]
d1nxqa_ : (GLY153) (TYR189) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |R-specific alcohol dehydrogenase |Lactobacillus brevis [TaxId: 1580]
d4rjza_ : (PHE66) (ALA87) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d4ee9a_ : (GLY138) (GLY168) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Uncultured bacterium [TaxId: 77133]
d3p4ea2 : (PRO309) (ILE330) [view usage] : d.139.1.0 |PurM C-terminal domain-like |PurM C-terminal domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d2v4mb_ : (ASP639) (PRO656) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ajrb_ : (GLY177) (LEU199) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma volcanium [TaxId: 273116]
d1pn3a_ : (PRO36) (GLY54) [view usage] : c.87.1.5 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Gtf glycosyltransferase |TDP-epi-vancosaminyltransferase GtfA |Amycolatopsis orientalis [TaxId: 31958]
d1q13a_ : (THR251) (SER271) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |20alpha-hydroxysteroid dehydrogenase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3fuua_ : (ASP77) (GLN98) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1ndka_ : (ALA89) (SER124) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d2jg7a_ : (PRO195) (CYS223) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Acanthopagrus schlegeli [TaxId: 72011]
d3ld3a_ : (PRO128) (VAL153) [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Anaplasma phagocytophilum [TaxId: 212042]
d4ib2a_ : (GLU247) (GLU278) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ruminococcus gnavus [TaxId: 411470]
d2rd5c_ : (ARG20) (ASP43) [view usage] : d.58.5.0 |Ferredoxin-like |GlnB-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4pe3a_ : (PRO214) (TYR232) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 349101]
d1vs6o1 : (ARG9) (HIS29) [view usage] : c.55.4.1 |Ribonuclease H-like motif |Translational machinery components |Ribosomal protein L18 and S11 |Ribosomal protein L18 (L18p) |Escherichia coli [TaxId: 562]
d2rd5d_ : (ARG20) (ASP43) [view usage] : d.58.5.0 |Ferredoxin-like |GlnB-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3taob_ : (PRO46) (ALA68) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4gota_ : (SER242) (SER273) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d4k3fa_ : (SER229) (PHE260) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1nmpa_ : (GLY214) (ASP242) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein YbgI |Escherichia coli [TaxId: 562]
d3ta6a_ : (PRO46) (ALA68) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4i8pa_ : (SER241) (GLY265) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Maize (Zea mays) [TaxId: 4577]
d3gvga_ : (PRO46) (ALA68) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3a1nb_ : (GLY177) (LEU199) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma volcanium [TaxId: 50339]
d1ywgo2 : (LYS257) (GLU281) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2a4ha1 : (TYR87) (TYR109) [view usage] : c.47.1.23 |Thioredoxin fold |Thioredoxin-like |Selenoprotein W-related |Selenoprotein sep15 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4poxa_ : (ALA76) (ALA95) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, d.68, c.2, d.58, c.79, c.82, c.56, c.66, c.80, c.93, c.135, c.72, b.40, c.36, c.47, c.55, c.87, d.81,
d.278, d.139, b.43, c.9, d.45