Tableau information
Concept source: d1vr5a1 amino acid (a.a.) range (GLU113)(ASP137)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU113) (TYR118) H1
(TYR123) (TRP129) H2
(ARG132) (ASP137) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -103.8° H2
E3 -151.2° 88.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4dnob_ : (TYR136) (GLN153) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
d3kwka_ : (ALA147) (TYR178) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d3kd2a_ : (TYR136) (GLU153) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
d4dc9d_ : (GLY110) (ASP149) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |DNA repair protein Rad51, catalytic domain |Methanococcus voltae [TaxId: 2188]
d1acfa_ : (THR38) (ALA63) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Acanthamoeba castellanii [TaxId: 5755]
d1ru3a_ : (HIS446) (THR472) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Monomeric acetyl-CoA synthase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d1rkib_ : (SER47) (ASP71) [view usage] : d.308.1.2 |THUMP domain |THUMP domain-like |PAE0736-like |Hypothetical protein PAE0736 |Pyrobaculum aerophilum [TaxId: 13773]
d1ywha3 : (ALA244) (THR267) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Urokinase plasminogen activator surface receptor uPAR |Human (Homo sapiens) [TaxId: 9606]
d2y40b_ : (TYR215) (THR235) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Thermus thermophilus [TaxId: 274]
d4dmhb_ : (TYR136) (GLU153) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
d1xbna_ : (THR4) (LEU40) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d4nbra_ : (THR207) (PRO233) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brucella abortus [TaxId: 262698]
d2vk3a_ : (THR43) (GLY66) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3i99a1 : (SER39) (GLY61) [view usage] : d.145.1.0 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1ajea_ : (GLN116) (ILE137) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |CDC42 |Human (Homo sapiens) [TaxId: 9606]
d2ahmf_ : (GLN173) (LEU194) [view usage] : d.302.1.1 |Coronavirus NSP8-like |Coronavirus NSP8-like |Coronavirus NSP8-like |Nonstructural protein 8, NSP8 |SARS coronavirus [TaxId: 227859]
d1fbub_ : (PRO195) (ASN227) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d2huha1 : (ASP190) (VAL216) [view usage] : b.7.5.1 |C2 domain-like |Smr-associated domain-like |Smr-associated domain |Putative DNA mismatch repair protein BT2179 |Bacteroides thetaiotaomicron [TaxId: 818]
d4cbya_ : (HIS678) (LYS705) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mpxa2 : (ALA314) (PRO337) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |Alpha-amino acid ester hydrolase |Xanthomonas citri [TaxId: 346]
d1fbqa_ : (PRO195) (ASN227) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d1d2na_ : (LYS657) (PRO676) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein |Chinese hamster (Cricetulus griseus) [TaxId: 10029]
d2ahmg1 : (GLN173) (LEU194) [view usage] : d.302.1.1 |Coronavirus NSP8-like |Coronavirus NSP8-like |Coronavirus NSP8-like |Nonstructural protein 8, NSP8 |SARS coronavirus [TaxId: 227859]
d4ixtb_ : (SER189) (GLN214) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Rhizobium radiobacter [TaxId: 358]
d1d1jb_ : (THR43) (GLY66) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Human (Homo sapiens), isoform II [TaxId: 9606]
d3e11a1 : (ASP5) (ASP37) [view usage] : d.92.1.17 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TTHA0227-like |Uncharacterized protein Acel_2062 |Acidothermus cellulolyticus [TaxId: 28049]
d1ugqa_ : (GLU128) (SER162) [view usage] : d.149.1.1 |Nitrile hydratase alpha chain |Nitrile hydratase alpha chain |Nitrile hydratase alpha chain |Cobalt-containing nitrile hydratase |Pseudonocardia thermophila [TaxId: 1848]
d1t82a_ : (MSE1) (SER28) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Putative thioesterase SO4397 |Shewanella oneidensis [TaxId: 70863]
d2avwa_ : (PHE172) (ASP226) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d1vb3a1 : (PHE186) (ASN212) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Escherichia coli [TaxId: 562]
d2ipla_ : (LYS113) (GLU149) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Galactose/glucose-binding protein |Escherichia coli [TaxId: 562]
d3lmsa_ : (TRP73) (VAL110) [view usage] : c.56.5.0 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2dmfa1 : (VAL12) (GLY35) [view usage] : d.20.1.3 |UBC-like |UBC-like |RWD domain |E3 ubiquitin-protein ligase RNF25 |Human (Homo sapiens) [TaxId: 9606]
d1f2ka_ : (SER1038) (ALA1063) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Acanthamoeba castellanii [TaxId: 5755]
d1qnda_ : (ALA9) (LYS40) [view usage] : d.106.1.1 |SCP-like |SCP-like |Sterol carrier protein, SCP |Sterol carrier protein 2 (SCP2) |Human (Homo sapiens) [TaxId: 9606]
d1d1jc_ : (THR43) (GLY66) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Human (Homo sapiens), isoform II [TaxId: 9606]
d4cbyb_ : (HIS678) (LYS705) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ckma1 : (ALA468) (SER487) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |YraM C-terminal domain |Haemophilus influenzae [TaxId: 727]
d1prqa_ : (THR38) (ALA63) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Acanthamoeba castellanii [TaxId: 5755]
d1t82c_ : (ASP2) (SER28) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Putative thioesterase SO4397 |Shewanella oneidensis [TaxId: 70863]
d2fvya_ : (LYS113) (GLU149) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Galactose/glucose-binding protein |Escherichia coli [TaxId: 562]
d2avwb_ : (PRO173) (ASP226) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d1mzoa_ : (GLU713) (ARG731) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d2arva_ : (SER57) (CYS81) [view usage] : g.17.1.2 |Cystine-knot cytokines |Cystine-knot cytokines |Transforming growth factor (TGF)-beta |Activin A (Inhibin beta A) |Human (Homo sapiens) [TaxId: 9606]
d2xt0a_ : (ASP123) (ASN147) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Plesiocystis pacifica [TaxId: 191768]
d4cbyd_ : (HIS678) (LYS705) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jkma_ : (SER202) (ILE231) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Carboxylesterase |Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
d1d1ja_ : (PRO44) (GLY66) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Human (Homo sapiens), isoform II [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.94, c.2, c.79, c.56, d.92, c.77, c.93, c.42, c.37, c.7, d.3, d.20, d.110, d.278, d.38, d.106, a.4, d.90, d.145,
e.26, b.7, g.17, d.308, g.7, d.149, d.302