Tableau information
Concept source: d4aiea1 amino acid (a.a.) range (VAL320)(PHE352)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL320) (GLY325) H1
(GLN328) (MET345) H2
(THR348) (PHE352) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 103.3° H2
E3 -97.6° 153.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ei5a3 : (ASN155) (ASP195) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-aminopeptidase, N-terminal domain |Ochrobactrum anthropi [TaxId: 529]
d3us8b_ : (VAL46) (CYS73) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d3b1ua3 : (TYR636) (PRO653) [view usage] : d.126.1.5 |Pentein, beta/alpha-propeller |Pentein |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4mb1a1 : (ASN342) (TYR368) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus subtilis [TaxId: 224308]
d1wdde2 : (PRO104) (LEU135) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Rice (Oryza sativa) [TaxId: 4530]
d2z6bd1 : (THR111) (ASN154) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate structural protein gp27 |Bacteriophage T4 [TaxId: 10665]
d4neec1 : (THR80) (PRO131) [view usage] : d.102.1.0 |Regulatory factor Nef |Regulatory factor Nef |automated matches |automated matches |Human immunodeficiency virus 1 [TaxId: 11676]
d1nhja2 : (PRO7) (ILE46) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA mismatch repair protein MutL |Escherichia coli [TaxId: 562]
d4lugb_ : (ASP153) (ASP184) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2eyqa5 : (ARG887) (HIS907) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Transcription-repair coupling factor, TRCF |Escherichia coli [TaxId: 562]
d1wdaa3 : (TYR636) (PRO653) [view usage] : d.126.1.5 |Pentein, beta/alpha-propeller |Pentein |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1g8ma2 : (ARG398) (ASP439) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Chicken (Gallus gallus) [TaxId: 9031]
d1j6pa2 : (SER71) (MSE114) [view usage] : c.1.9.9 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |SAH/MTA deaminase-like |Hypothetical protein TM0936, probable catalytic domain |Thermotoga maritima [TaxId: 2336]
d2ff7a_ : (GLY600) (PHE629) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Haemolysin B ATP-binding protein |Escherichia coli [TaxId: 562]
d1q85a2 : (PRO113) (THR147) [view usage] : c.1.26.1 |TIM beta/alpha-barrel |Homocysteine S-methyltransferase |Homocysteine S-methyltransferase |Cobalamin-dependent methionine synthase MetH, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d1rqea2 : (ALA59) (LEU91) [view usage] : c.1.10.5 |TIM beta/alpha-barrel |Aldolase |HMGL-like |Transcarboxylase 5S subunit, N-terminal domain |Propionibacterium freudenreichii shermanii [TaxId: 1752]
d4maza1 : (ASN342) (TYR368) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus subtilis [TaxId: 224308]
d1dela_ : (SER130) (ASP175) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Deoxynucleoside monophosphate kinase |Bacteriophage T4 [TaxId: 10665]
d4luga_ : (ASP153) (ASP184) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1b62a2 : (GLN9) (ILE46) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA mismatch repair protein MutL |Escherichia coli [TaxId: 562]
d4dyda1 : (VAL58) (ASP77) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Acinetobacter baylyi [TaxId: 202950]
d1g8sa_ : (LYS179) (ASP212) [view usage] : c.66.1.3 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Fibrillarin homologue |Fibrillarin homologue |Methanococcus jannaschii [TaxId: 2190]
d1b85b_ : (LYS95) (THR136) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Fungal peroxidase (ligninase) |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d2wqta_ : (LEU26) (LEU63) [view usage] : d.177.1.1 |FAH |FAH |FAH |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1e7pa3 : (PHE287) (ILE330) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Fumarate reductase |Wolinella succinogenes [TaxId: 844]
d1b63a2 : (PRO8) (ILE46) [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA mismatch repair protein MutL |Escherichia coli [TaxId: 562]
d2pt7b_ : (ARG73) (ASN98) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Hexameric traffic ATPase, HP0525 |Helicobacter pylori [TaxId: 210]
d3p71t_ : (GLY254) (ASP280) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4d9eb_ : (ASP266) (HIS314) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d1q7ma2 : (PRO113) (GLU146) [view usage] : c.1.26.1 |TIM beta/alpha-barrel |Homocysteine S-methyltransferase |Homocysteine S-methyltransferase |Cobalamin-dependent methionine synthase MetH, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d2dgkc_ : (GLY322) (LEU382) [view usage] : c.67.1.6 |PLP-dependent transferase-like |PLP-dependent transferases |Pyridoxal-dependent decarboxylase |Glutamate decarboxylase beta, GadB |Escherichia coli [TaxId: 562]
d1mbza1 : (GLN308) (GLY347) [view usage] : c.26.2.1 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |N-type ATP pyrophosphatases |beta-Lactam synthetase |Streptomyces clavuligerus [TaxId: 1901]
d2pwfa1 : (ALA331) (PHE364) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Pseudomonas mesoacidophila [TaxId: 265293]
d1m9na2 : (ARG398) (ASP439) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Chicken (Gallus gallus) [TaxId: 9031]
d4orzb_ : (THR84) (PRO135) [view usage] : d.102.1.1 |Regulatory factor Nef |Regulatory factor Nef |Regulatory factor Nef |automated matches |Hiv-1 m:b_arv2/sf2 [TaxId: 11685]
d1wkya2 : (TYR225) (ILE251) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-mannanase |Bacillus sp. JAMB-602 [TaxId: 244966]
d3i2ea_ : (SER263) (LYS282) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vcoa2 : (THR101) (VAL152) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |CTP synthase PyrG, N-terminal domain |Thermus thermophilus [TaxId: 274]
d3t02a_ : (ASN168) (THR210) [view usage] : c.76.1.0 |Alkaline phosphatase-like |Alkaline phosphatase-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1nt2a_ : (LYS162) (SER194) [view usage] : c.66.1.3 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Fibrillarin homologue |Fibrillarin homologue |Archaeoglobus fulgidus [TaxId: 2234]
d1wjla_ : (ASN63) (LEU87) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Zasp (Cypher, Oracle 1) |Mouse (Mus musculus) [TaxId: 10090]
d1jdra_ : (ALA83) (PRO134) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1q9jb2 : (SER219) (LEU268) [view usage] : c.43.1.2 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |NRPS condensation domain (amide synthase) |Polyketide synthase associated protein 5, PapA5 |Mycobacterium tuberculosis [TaxId: 1773]
d3khya2 : (MSE275) (GLY322) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
d4mkva1 : (PRO104) (LEU135) [view usage] : d.58.9.0 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |automated matches |automated matches |Pea (Pisum sativum) [TaxId: 3888]
d3r9pa2 : (ASP271) (GLY319) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Mycobacterium avium [TaxId: 1770]
d1acia_ : (LYS47) (ASP76) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d1upmb1 : (PRO104) (LEU135) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Spinach (Spinacia oleracea) [TaxId: 3562]
d1sm9a_ : (HIS242) (ARG274) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Xylose reductase |Fungus (Candida tenuis) [TaxId: 45596]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, c.67, c.2, c.76, d.58, c.79, c.26, c.66, c.77, a.93, d.122, b.40, c.37, c.55, d.126, c.97, c.43, d.177, a.4,
d.168, b.36, b.106, d.102