Tableau information
Concept source: d2ie3c1 amino acid (a.a.) range (PHE6)(ARG49)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE6) (ASN18) H1
(SER24) (GLU42) H2
(ASN44) (ARG49) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -112.1° H2
E3 -93.3° 82.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ut5a2 : (ASN85) (ARG125) [view usage] : c.120.1.2 |PIN domain-like |PIN domain-like |5' to 3' exonuclease catalytic domain |T5 5'-exonuclease |Bacteriophage T5 [TaxId: 10726]
d3b6ra2 : (LEU299) (GLY321) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wofa_ : (THR45) (ASN63) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |SARS coronavirus [TaxId: 227859]
d2bena_ : (LYS80) (LYS100) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Chitin-binding protein CBP21 |Serratia marcescens [TaxId: 615]
d4fu4a2 : (ASP413) (ALA433) [view usage] : b.66.1.0 |4-bladed beta-propeller |Hemopexin-like domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3e6da1 : (ILE22) (LYS39) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d4a4da_ : (PRO63) (GLY86) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2p65a_ : (GLN166) (GLN185) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d4b5ea_ : (GLY104) (VAL125) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2h6ca2 : (ILE22) (ALA38) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium dehalogenans [TaxId: 36854]
d3meda1 : (VAL276) (GLY316) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Hiv-1 m:b_hxb2r [TaxId: 11706]
d1kdga2 : (THR672) (SER692) [view usage] : d.16.1.1 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GMC oxidoreductases |Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d1c8nb_ : (THR222) (GLY247) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Necrovirus coat protein |TNV (Tobacco necrosis virus) [TaxId: 12054]
d3vwxc2 : (PRO183) (PRO222) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |House fly (Musca domestica) [TaxId: 7370]
d3klia1 : (VAL276) (TYR318) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1s70a_ : (ASN8) (ALA57) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-1 (PP-1) |Human (Homo sapiens), gamma isoform [TaxId: 9606]
d4ez9a2 : (ALA558) (ILE605) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d2zd1a1 : (VAL276) (GLY316) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d4dqpd2 : (ALA558) (ILE605) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d4a02a_ : (SER81) (THR100) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d1kv7a2 : (GLN302) (ALA323) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d3groa_ : (PHE201) (PHE230) [view usage] : c.69.1.13 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Thioesterases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a9ya_ : (ALA238) (SER270) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Adenosine kinase |Toxoplasma gondii [TaxId: 5811]
d1xjva2 : (LEU207) (ASP224) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Protection of telomeres protein 1, Pot1 |Human (Homo sapiens) [TaxId: 9606]
d2p6ba_ : (ARG42) (ALA83) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-2B (PP-2B, calcineurin A subunit) |Human (Homo sapiens) [TaxId: 9606]
d1fjma_ : (ASP10) (ALA57) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-1 (PP-1) |Rabbit (Oryctolagus cuniculus), alpha isoform [TaxId: 9986]
d4eg5b2 : (GLY737) (VAL756) [view usage] : a.27.1.0 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Trypanosoma brucei [TaxId: 999953]
d4b5eb_ : (LEU105) (VAL125) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d3e6bb1 : (ILE22) (LYS39) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d2h6ba2 : (ILE22) (ALA38) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d3a2ba_ : (THR277) (PHE330) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Sphingobacterium multivorum [TaxId: 28454]
d2fmya1 : (LEU12) (SER34) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Carboxydothermus hydrogenoformans [TaxId: 129958]
d1ojia_ : (ALA366) (GLY392) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Humicola insolens, Cel7b [TaxId: 34413]
d2o8aa_ : (ILE9) (ALA57) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-1 (PP-1) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1mkfa_ : (SER221) (THR248) [view usage] : b.116.1.1 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
d2p3ha1 : (LEU23) (PRO63) [view usage] : d.145.1.4 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CorC/HlyC domain-like |Uncharacterized protein Cgl1194/Cg1349 |Corynebacterium glutamicum [TaxId: 1718]
d1c8na_ : (GLY221) (ASP246) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Necrovirus coat protein |TNV (Tobacco necrosis virus) [TaxId: 12054]
d3pt9a3 : (CYS1194) (GLY1226) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |Methyltransferase domain from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d3e6db1 : (ILE21) (ALA37) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d3e6ba1 : (ILE22) (LYS39) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d1tdtb_ : (GLN2) (ILE49) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |Mycobacterium bovis [TaxId: 1765]
d3r20a_ : (GLY93) (GLY131) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1obga_ : (PRO90) (VAL109) [view usage] : d.143.1.1 |SAICAR synthase-like |SAICAR synthase-like |SAICAR synthase |SAICAR synthase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3dlka1 : (ARG277) (TYR318) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, b.82, c.67, c.69, b.81, d.159, b.29, b.47, c.66, c.72, b.40, c.37, b.121, b.6, b.1, d.143, c.120, d.145, d.128, a.45,
d.16, a.27, b.66, b.116