Tableau information
Concept source: d3ak4a_ amino acid (a.a.) range (PRO228)(THR254)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO228) (SER240) H1
(SER240) (MET246) H2
(GLY248) (THR254) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -70.5° H2
E3 153.5° 122.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2cr2a1 : (ARG118) (VAL144) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |Speckle-type poz protein SPOP |Human (Homo sapiens) [TaxId: 9606]
d4is3c_ : (PRO218) (ASP244) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Clostridium scindens [TaxId: 29347]
d3m7mx_ : (ALA207) (PHE230) [view usage] : d.193.1.1 |Hsp33 domain |Hsp33 domain |Hsp33 domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2z51a1 : (THR5) (LEU29) [view usage] : d.52.8.0 |Alpha-lytic protease prodomain-like |Fe-S cluster assembly (FSCA) domain-like |automated matches |automated matches |Arabidopsis thaliana
d3so4c2 : (SER201) (ASN232) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d1nfra_ : (PRO209) (ASP235) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Putative oxidoreductase Rv2002 |Mycobacterium tuberculosis [TaxId: 1773]
d3nfla_ : (THR578) (LEU600) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Tyrosine-protein phosphatase non-receptor type 4, PTPN4 |Human (Homo sapiens) [TaxId: 9606]
d1hvqa_ : (PRO231) (TRP255) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Hevamine A (chitinase/lysozyme) |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d4p8ba_ : (TYR120) (GLY153) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Cupriavidus necator [TaxId: 381666]
d3vzqa_ : (ILE220) (ASN240) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Cupriavidus necator [TaxId: 381666]
d3f1la_ : (THR216) (GLN243) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3f1lb_ : (THR216) (GLN243) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3gr6d_ : (GLN223) (ASP249) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Staphylococcus aureus [TaxId: 1280]
d3vofa_ : (GLY118) (LEU147) [view usage] : c.6.1.0 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |automated matches |automated matches |Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
d2bgka1 : (ALA233) (ASP259) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Rhizome secoisolariciresinol dehydrogenase |Mayapple (Podophyllum peltatum) [TaxId: 35933]
d4loja_ : (ALA155) (LEU203) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4e4ya_ : (PRO209) (ASP235) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Francisella tularensis [TaxId: 177416]
d2hgjg1 : (LEU3) (VAL37) [view usage] : d.77.1.1 |RL5-like |RL5-like |Ribosomal protein L5 |Ribosomal protein L5 |Thermus thermophilus [TaxId: 274]
d1r9la_ : (ASN110) (THR134) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glycine betaine-binding periplasmic protein ProX |Escherichia coli [TaxId: 562]
d1fn9a_ : (ARG78) (ASN132) [view usage] : d.196.1.1 |Outer capsid protein sigma 3 |Outer capsid protein sigma 3 |Outer capsid protein sigma 3 |Outer capsid protein sigma 3 |Reovirus [TaxId: 10891]
d1hk8a_ : (ASP67) (CYS79) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d3d2ud1 : (PRO45) (SER64) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ligand binding domain of lir-1 (ilt2) |Human (Homo sapiens) [TaxId: 9606]
d3d9sc_ : (SER160) (ASN185) [view usage] : f.19.1.0 |Aquaporin-like |Aquaporin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1byqa_ : (GLU199) (GLU223) [view usage] : d.122.1.1 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Heat shock protein 90, HSP90, N-terminal domain |HSP90 |Human (Homo sapiens) [TaxId: 9606]
d2e7ga1 : (GLU88) (THR130) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Human (Homo sapiens) [TaxId: 9606]
d2kzfa_ : (THR59) (GLU97) [view usage] : d.52.7.0 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d4jp2a_ : (VAL213) (ASP233) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4nbua_ : (PRO219) (ASP245) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus sp. [TaxId: 161544]
d1h2tc1 : (LYS208) (GLU227) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |CBP80, 80KDa nuclear cap-binding protein |Human (Homo sapiens) [TaxId: 9606]
d3ucxa_ : (THR227) (ASN254) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d3rw7d_ : (ARG279) (LEU298) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3exec_ : (SER101) (LYS129) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
d2b51a1 : (ILE231) (ASP251) [view usage] : d.218.1.10 |Nucleotidyltransferase |Nucleotidyltransferase |RNA editing terminal uridyl transferase 2, RET2, catalytic domain |RNA editing terminal uridyl transferase 2, TUTase 2, RET2 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d4jhla_ : (VAL66) (MSE88) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d1neza2 : (PRO57) (TYR99) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC, alpha-1 and alpha-2 domains |Mouse (Mus musculus), tla(c), H-2 class [TaxId: 10090]
d4l4pa_ : (THR28) (PRO49) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Caldicellulosiruptor bescii [TaxId: 521460]
d3ewjb_ : (VAL314) (TYR340) [view usage] : d.92.1.10 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2omob_ : (THR68) (TYR95) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein NE0621 |Nitrosomonas europaea [TaxId: 915]
d4a19x_ : (GLU48) (GLU80) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1wg6a_ : (ASN93) (SER122) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) |Mouse (Mus musculus) [TaxId: 10090]
d4n4ub_ : (SER110) (PRO143) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 257310]
d2ktbb_ : (SER213) (ASP229) [view usage] : a.29.2.0 |Bromodomain-like |Bromodomain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wkvb_ : (ASN39) (ASP62) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Aeropyrum pernix [TaxId: 56636]
d3a28a_ : (PRO226) (ASP252) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brevibacterium saccharolyticum [TaxId: 1718]
d1rkia1 : (LEU48) (ASP71) [view usage] : d.308.1.2 |THUMP domain |THUMP domain-like |PAE0736-like |Hypothetical protein PAE0736 |Pyrobaculum aerophilum [TaxId: 13773]
d1zvfb_ : (ILE9) (HIS30) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ftrb_ : (ASP69) (MSE105) [view usage] : d.58.4.15 |Ferredoxin-like |Dimeric alpha+beta barrel |EthD-like |Hypothetical protein BH0200 |Bacillus halodurans [TaxId: 86665]
d1iyfa_ : (ARG51) (ARG72) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like domain of parkin |Human (Homo sapiens) [TaxId: 9606]
d4lojb_ : (HIS156) (LEU203) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2fv5b_ : (ASP313) (TYR340) [view usage] : d.92.1.10 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1l9ga_ : (ARG4) (ASN36) [view usage] : c.18.1.2 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Mug-like |Thermophilic uracil-DNA glycosylase |Thermotoga maritima [TaxId: 2336]
d3refb_ : (TRP114) (GLY131) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d2idbb2 : (ASP327) (GLU359) [view usage] : d.333.1.1 |UbiD C-terminal domain-like |UbiD C-terminal domain-like |UbiD C-terminal domain-like |3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD |Escherichia coli [TaxId: 562]
d4orsa_ : (ASN51) (PRO71) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3e11b_ : (ASP5) (VAL35) [view usage] : d.92.1.17 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TTHA0227-like |Uncharacterized protein Acel_2062 |Acidothermus cellulolyticus [TaxId: 28049]
d3f1ka_ : (THR216) (GLN243) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1flka1 : (GLN476) (ASP497) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 3 (TRAF3) |Human (Homo sapiens) [TaxId: 9606]
d1av4a3 : (LEU101) (SER138) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Copper amine oxidase, domains 1 and 2 |Arthrobacter globiformis [TaxId: 1665]
d2oyna1 : (GLY18) (LYS47) [view usage] : b.43.5.2 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |CTP-dependent riboflavin kinase-like |CTP-dependent riboflavin kinase, Rfk |Methanococcus jannaschii [TaxId: 2190]
d2wyva_ : (GLN223) (ASP249) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3pjfb_ : (ILE222) (ASP248) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3regb_ : (TRP114) (GLY131) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d2ivda2 : (HIS346) (MET365) [view usage] : d.16.1.5 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |L-aminoacid/polyamine oxidase |Protoporphyrinogen oxidase |Myxococcus xanthus [TaxId: 34]
d1f48a1 : (ALA112) (ASP142) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Arsenite-translocating ATPase ArsA |Escherichia coli [TaxId: 562]
d2ftra1 : (ASP69) (ASP106) [view usage] : d.58.4.15 |Ferredoxin-like |Dimeric alpha+beta barrel |EthD-like |Hypothetical protein BH0200 |Bacillus halodurans [TaxId: 86665]
d3gr6g_ : (GLN223) (ASP249) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Staphylococcus aureus [TaxId: 1280]
d3vaya_ : (PHE107) (ASN128) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 223283]
d2ddfb_ : (ASP313) (TYR340) [view usage] : d.92.1.10 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2wyuc_ : (GLN223) (ASP249) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2omoa1 : (LEU72) (GLY92) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein NE0621 |Nitrosomonas europaea [TaxId: 915]
d1i13a_ : (THR14) (LEU51) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine PRTase |Trypanosoma cruzi [TaxId: 5693]
d1ipea_ : (MET231) (ASP251) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Tropinone reductase |Jimsonweed (Datura stramonium), II [TaxId: 4076]
d3i1ja_ : (ALA219) (GLN246) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas syringae [TaxId: 323]
d2pgca1 : (MSE172) (ILE205) [view usage] : d.58.4.23 |Ferredoxin-like |Dimeric alpha+beta barrel |Marine metagenome family DABB3 |Uncharacterized protein GOS_2596953 |Environmental samples
d1jkma_ : (GLY173) (SER202) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Carboxylesterase |Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
d3raja_ : (ASP252) (ASN277) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |Human (Homo sapiens) [TaxId: 9606]
d1ck4a_ : (MET225) (VAL255) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha1-beta1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4r9va_ : (ARG470) (ALA497) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Photobacterium damselae [TaxId: 38293]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, b.82, c.69, c.94, c.2, c.6, d.58, i.1, a.118, c.108, c.79, d.92, d.122, c.23, c.37, c.36, c.7, c.18, b.60,
c.87, c.62, b.1, d.17, d.19, c.61, d.193, d.15, b.43, d.16, a.29, f.19, d.218, d.130, b.36, d.52, d.308, d.333, d.77, b.8,
d.387, d.196