Tableau information
Concept source: d1q19a1 amino acid (a.a.) range (GLU217)(PRO244)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU217) (LEU234) H1
(LEU234) (PHE238) H2
(ASP239) (PRO244) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 40.4° H2
E3 114.6° 108.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ft2b_ : (THR218) (GLY241) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1lbeb_ : (PRO132) (VAL159) [view usage] : c.23.14.3 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |ADP ribosyl cyclase-like |ADP ribosyl cyclase |California sea hare (Aplysia californica) [TaxId: 6500]
d1n94b_ : (THR218) (GLY241) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2c6qb_ : (VAL301) (THR337) [view usage] : c.1.5.0 |TIM beta/alpha-barrel |Inosine monophosphate dehydrogenase (IMPDH) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3u9fd_ : (TRP16) (VAL37) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d2zcid1 : (PRO106) (GLY134) [view usage] : c.109.1.0 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d1kyzc1 : (SER30) (SER58) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1d8db_ : (THR218) (GLY241) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3vwxa2 : (TYR198) (ILE220) [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |House fly (Musca domestica) [TaxId: 7370]
d1svva_ : (GLY250) (ILE303) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Low-specificity threonine aldolase |Leishmania major [TaxId: 5664]
d1mioa_ : (ASP305) (TYR342) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, alpha chain |Clostridium pasteurianum [TaxId: 1501]
d1iooa_ : (ASN100) (THR133) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Gemetophytic self-incompatibility associated SF11-RNase |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d3s7na2 : (PRO204) (ASP226) [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Bacteriophytochrome BphP |Deinococcus radiodurans [TaxId: 1299]
d1iyba_ : (ASP106) (SER140) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |RNase NW |Nicotiana glutinosa [TaxId: 35889]
d4gjhc_ : (CYS470) (ASP499) [view usage] : b.8.1.0 |TRAF domain-like |TRAF domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2zcia1 : (PRO106) (GLY134) [view usage] : c.109.1.0 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d2df4a1 : (GLY352) (PRO402) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Glutamyl-tRNA(Gln) amidotransferase subunit A |Staphylococcus aureus [TaxId: 1280]
d1oo3a_ : (SER80) (LYS110) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Phosphatidylinositol 3-kinase, p85-alpha subunit |Cow (Bos taurus) [TaxId: 9913]
d1myra_ : (ASN16) (SER36) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |White mustard (Sinapis alba) [TaxId: 3728]
d1ii7b_ : (SER148) (HIS173) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d1e4mm_ : (ASN16) (SER36) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |White mustard (Sinapis alba) [TaxId: 3728]
d1zxoa2 : (GLU207) (GLY240) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |Hypothetical protein BT3618 |Bacteroides thetaiotaomicron [TaxId: 818]
d2ap9e_ : (THR11) (LYS36) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |N-acetyl-l-glutamate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d1vlca_ : (GLU51) (SER71) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Thermotoga maritima [TaxId: 2336]
d3nh2b_ : (PRO72) (SER91) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d4eraa_ : (ARG247) (ALA270) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d1kssa3 : (GLY458) (GLU498) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Flavocytochrome c3 (respiratory fumarate reductase) |Shewanella frigidimarina [TaxId: 56812]
d1qvea_ : (GLU27) (THR61) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |Pilin P1 |Pseudomonas aeruginosa [TaxId: 287]
d3u01a_ : (PRO41) (SER61) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Frog (Rana pipiens) [TaxId: 8404]
d1n0ua3 : (ASP696) (GLN725) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor 2 (eEF-2), domain IV |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2b7ra3 : (GLY458) (GLU498) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Flavocytochrome c3 (respiratory fumarate reductase) |Shewanella frigidimarina [TaxId: 56812]
d1wekb_ : (LEU6) (GLY44) [view usage] : c.129.1.1 |MCP/YpsA-like |MCP/YpsA-like |MoCo carrier protein-like |Hypothetical protein TT1465 (TTHA1644) |Thermus thermophilus [TaxId: 274]
d1hhsa_ : (ILE294) (SER326) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d3fd7a_ : (PRO41) (SER61) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Frog (Rana pipiens) [TaxId: 8404]
d2zirb_ : (THR218) (GLY241) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1sija4 : (THR832) (PRO858) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Aldehyde oxidoreductase |Desulfovibrio gigas [TaxId: 879]
d4pwva_ : (PRO20) (GLY48) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces sp. [TaxId: 1001349]
d4kiha_ : (GLY405) (PRO453) [view usage] : a.102.1.0 |alpha/alpha toroid |Six-hairpin glycosidases |automated matches |automated matches |Clostridium cellulovorans [TaxId: 1493]
d3j6vg_ : (GLN45) (ALA77) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d4gtob_ : (THR218) (GLY241) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4gjhb_ : (CYS470) (ASP499) [view usage] : b.8.1.0 |TRAF domain-like |TRAF domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1dwam_ : (ASN16) (SER36) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |White mustard (Sinapis alba) [TaxId: 3728]
d1v4va_ : (LEU72) (GLY99) [view usage] : c.87.1.3 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-N-acetylglucosamine 2-epimerase |UDP-N-acetylglucosamine 2-epimerase |Thermus thermophilus [TaxId: 274]
d4gjha_ : (CYS470) (ASP499) [view usage] : b.8.1.0 |TRAF domain-like |TRAF domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, a.104, d.159, i.1, c.26, c.92, c.117, a.102, c.77, c.23, c.55, d.14, c.87, d.133, d.110, c.43, c.73, c.109,
d.124, a.4, d.5, d.168, a.45, c.129, d.93, d.24, b.8