Tableau information
Concept source: d3ebsa_ amino acid (a.a.) range (SER224)(ASP266)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER224) (LEU230) H1
(PRO233) (THR258) H2
(ASN262) (ASP266) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -79.1° H2
E3 88.8° 154.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1qrkb4 : (SER295) (PHE339) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1h0ma2 : (HIS54) (SER86) [view usage] : d.110.5.1 |Profilin-like |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Transcription factor TraR, N-terminal domain |Agrobacterium tumefaciens [TaxId: 358]
d3tv5c1 : (LEU1493) (GLU1541) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2gu2a1 : (PRO159) (GLY179) [view usage] : c.56.5.7 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |AstE/AspA-like |Aspartoacylase AspA |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1icxa_ : (LYS17) (GLU44) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Plant pathogenesis-related protein PR10 |Yellow lupine (Lupinus luteus) [TaxId: 3873]
d3zzfb_ : (GLN299) (ILE328) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3qgua_ : (SER324) (GLY370) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d3sepa5 : (LEU789) (LEU822) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1i1qa_ : (GLU114) (GLY148) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE |Salmonella typhimurium [TaxId: 90371]
d4bqfb_ : (LYS426) (VAL458) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4wsha_ : (ASP117) (GLY147) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d3n3ka_ : (HIS800) (LYS848) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 8 |Human (Homo sapiens) [TaxId: 9606]
d1od4c1 : (GLN1494) (GLU1541) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2bwob_ : (PRO282) (ILE337) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d3zzfd_ : (GLN299) (ILE328) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3h0sa1 : (PRO1495) (GLU1541) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2lf2a_ : (VAL27) (THR54) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Cytophaga hutchinsonii [TaxId: 269798]
d1uytc1 : (LEU1493) (GLU1541) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ewqa1 : (ARG401) (ASN443) [view usage] : a.113.1.1 |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |Thermus aquaticus [TaxId: 271]
d1isea_ : (ASP4) (VAL59) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Escherichia coli [TaxId: 562]
d3i3eb5 : (LEU789) (LEU822) [view usage] : b.30.5.1 |Supersandwich |Galactose mutarotase-like |beta-Galactosidase, domain 5 |beta-Galactosidase, domain 5 |Escherichia coli [TaxId: 562]
d11asa_ : (GLY124) (PRO162) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Asparagine synthetase |Escherichia coli [TaxId: 562]
d1arla_ : (TYR169) (HIS196) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Cow (Bos taurus) [TaxId: 9913]
d1qrka4 : (ILE298) (PHE339) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d2pt7b_ : (GLU22) (GLY52) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Hexameric traffic ATPase, HP0525 |Helicobacter pylori [TaxId: 210]
d2cbna1 : (ALA241) (HIS270) [view usage] : d.157.1.7 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |RNase Z-like |Ribonuclease Z (RNase Z) |Escherichia coli [TaxId: 562]
d1h0mc2 : (HIS54) (SER86) [view usage] : d.110.5.1 |Profilin-like |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Transcription factor TraR, N-terminal domain |Agrobacterium tumefaciens [TaxId: 358]
d3tnya_ : (PRO189) (GLY223) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d2c8ja_ : (LYS187) (SER221) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |automated matches |Bacillus anthracis [TaxId: 198094]
d1dtda_ : (SER525) (HIS552) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Human (Homo sapiens) [TaxId: 9606]
d3b55a_ : (VAL393) (GLN434) [view usage] : c.150.1.3 |EreA/ChaN-like |EreA/ChaN-like |EreA-like |Succinoglycan biosynthesis protein BC3120 |Bacillus cereus [TaxId: 1396]
d3tv5a1 : (LYS1496) (GLU1541) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2gpia1 : (ASN50) (ARG88) [view usage] : d.354.1.1 |Shew3726-like |Shew3726-like |Shew3726-like |Hypothetical protein Shew3726 |Shewanella loihica [TaxId: 359303]
d3tz3c1 : (GLN1494) (GLU1541) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1z94b_ : (PRO15) (LEU42) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Hypothetical protein CV1439 |Chromobacterium violaceum [TaxId: 536]
d2o5ub_ : (ASP26) (TYR72) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Hypothetical thioesterase PA5185 |Pseudomonas aeruginosa [TaxId: 287]
d1z94c_ : (PRO15) (LEU42) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Hypothetical protein CV1439 |Chromobacterium violaceum [TaxId: 536]
d1l3lc2 : (ARG55) (GLY87) [view usage] : d.110.5.1 |Profilin-like |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Transcription factor TraR, N-terminal domain |Agrobacterium tumefaciens [TaxId: 358]
d1luia_ : (SER72) (GLY111) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Itk/tsk protein tyrosine kinase |Mouse (Mus musculus) [TaxId: 10090]
d4tlra_ : (GLY516) (LEU564) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis c virus (isolate 1) [TaxId: 11104]
d1od2b1 : (PRO1495) (GLU1541) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1l5xb_ : (TRP132) (PHE172) [view usage] : c.106.1.1 |SurE-like |SurE-like |SurE-like |SurE homolog PAE2908 (SurE-alpha) |Pyrobaculum aerophilum [TaxId: 13773]
d1l3la2 : (HIS54) (SER86) [view usage] : d.110.5.1 |Profilin-like |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Transcription factor TraR, N-terminal domain |Agrobacterium tumefaciens [TaxId: 358]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, a.104, b.30, c.56, c.92, d.157, c.14, d.129, c.37, d.104, d.3, c.87, d.110, c.73, d.38, d.67, d.93, c.106,
a.113, d.161, c.150, d.354