Tableau information
Concept source: d1cvia_ amino acid (a.a.) range (LEU1041)(THR1075)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU1041) (ARG1056) H1
(TYR1057) (ASN1062) H2
(VAL1070) (THR1075) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -72.4° H2
E3 151.2° -115.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1buca2 : (THR106) (LEU128) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Butyryl-CoA dehydrogenase, NM domains |Megasphaera elsdenii [TaxId: 907]
d3j38c_ : (PHE74) (LYS91) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1nu9a_ : (ARG4) (ASP21) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Thrombin |Human (Homo sapiens) [TaxId: 9606]
d1lqja_ : (LEU11) (PRO39) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |Uracil-DNA glycosylase |Escherichia coli [TaxId: 562]
d1b70b5 : (ALA482) (TYR511) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain |Thermus thermophilus [TaxId: 274]
d4r9oc_ : (GLN188) (SER210) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Salmonella enterica [TaxId: 99287]
d4r9oa_ : (GLN188) (SER210) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Salmonella enterica [TaxId: 99287]
d3igra_ : (SER42) (VAL72) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Vibrio fischeri [TaxId: 312309]
d1c9ub_ : (GLN184) (ASN203) [view usage] : b.68.2.1 |6-bladed beta-propeller |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Soluble quinoprotein glucose dehydrogenase |Acinetobacter calcoaceticus [TaxId: 471]
d2pinb_ : (THR215) (PRO247) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Thyroid hormone receptor beta (TR-beta) |Human (Homo sapiens) [TaxId: 9606]
d1r27a2 : (ASP130) (SER161) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d2dvla1 : (SER101) (LEU123) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Thermus thermophilus [TaxId: 300852]
d2gcaa2 : (ARG23) (GLY46) [view usage] : c.72.2.2 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |Folylpolyglutamate synthetase |Folylpolyglutamate synthetase |Lactobacillus casei [TaxId: 1582]
d1ilwa_ : (ALA129) (ASP153) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Pyrazinamidase/nicotinamidase |Pyrococcus horikoshii [TaxId: 53953]
d1p3da1 : (LYS88) (GLN106) [view usage] : c.5.1.1 |MurCD N-terminal domain |MurCD N-terminal domain |MurCD N-terminal domain |UDP-N-acetylmuramate-alanine ligase MurC |Haemophilus influenzae [TaxId: 727]
d1p31a1 : (LYS88) (GLN106) [view usage] : c.5.1.1 |MurCD N-terminal domain |MurCD N-terminal domain |MurCD N-terminal domain |UDP-N-acetylmuramate-alanine ligase MurC |Haemophilus influenzae [TaxId: 727]
d2z77c_ : (LYS57) (CYS77) [view usage] : d.17.4.3 |Cystatin-like |NTF2-like |Ketosteroid isomerase-like |Hypothetical protein Rv0760c |Mycobacterium tuberculosis H37Rv [TaxId: 83332]
d2jhqa_ : (ILE11) (PRO39) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |automated matches |Vibrio cholerae [TaxId: 666]
d1h7aa_ : (PHE30) (ASP67) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d1xpha_ : (ALA309) (GLY329) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hk8a_ : (PHE30) (ASP67) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d1aama_ : (LEU233) (TYR256) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Aspartate aminotransferase, AAT |Escherichia coli [TaxId: 562]
d1ns0a_ : (LEU225) (GLN250) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d2a8ca_ : (MET1) (CYS42) [view usage] : c.53.2.1 |Resolvase-like |beta-carbonic anhydrase, cab |beta-carbonic anhydrase, cab |automated matches |Haemophilus influenzae [TaxId: 727]
d2z71a_ : (ASN244) (THR276) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
d1yvfa_ : (ILE539) (SER563) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d1nsxb_ : (LEU225) (GLN250) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d4oqpa_ : (ALA180) (ARG213) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d1hage_ : (ARG4) (GLY19) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Thrombin |Human (Homo sapiens) [TaxId: 9606]
d1yuoa_ : (GLY86) (PRO120) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |Uracil-DNA glycosylase |Human (Homo sapiens) [TaxId: 9606]
d3qy1a_ : (ASP3) (GLY41) [view usage] : c.53.2.1 |Resolvase-like |beta-carbonic anhydrase, cab |beta-carbonic anhydrase, cab |automated matches |Salmonella enterica [TaxId: 99287]
d3sqee_ : (ARG4) (ALA22) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Thrombin |Human (Homo sapiens) [TaxId: 9606]
d2gnpa1 : (LEU182) (SER214) [view usage] : c.124.1.8 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |SorC sugar-binding domain-like |Transcriptional regulator SP0247 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2yvaa_ : (MET1) (ASN49) [view usage] : c.80.1.3 |SIS domain |SIS domain |mono-SIS domain |automated matches |Escherichia coli [TaxId: 562]
d1p91a_ : (THR234) (GLN266) [view usage] : c.66.1.33 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA methyltransferase RlmA |rRNA methyltransferase RlmA |Escherichia coli [TaxId: 562]
d2v77a_ : (ASP89) (VAL110) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hw5a_ : (SER107) (ASN135) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1q16a2 : (PRO131) (SER161) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d1mc8a2 : (GLU102) (PRO150) [view usage] : c.120.1.2 |PIN domain-like |PIN domain-like |5' to 3' exonuclease catalytic domain |Flap endonuclease-1 (Fen-1 nuclease) |Pyrococcus horikoshii [TaxId: 53953]
d1oaod_ : (ASP138) (GLY161) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit |Moorella thermoacetica [TaxId: 1525]
d4oqqa_ : (ALA180) (ARG213) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2a8cc_ : (ASP2) (GLY41) [view usage] : c.53.2.1 |Resolvase-like |beta-carbonic anhydrase, cab |beta-carbonic anhydrase, cab |automated matches |Haemophilus influenzae [TaxId: 727]
d2y3ia_ : (TRP344) (GLY372) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hr3a1 : (SER122) (MET144) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d3ir5a1 : (PRO131) (SER161) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1gqqa1 : (LYS88) (GLN106) [view usage] : c.5.1.1 |MurCD N-terminal domain |MurCD N-terminal domain |MurCD N-terminal domain |UDP-N-acetylmuramate-alanine ligase MurC |Haemophilus influenzae [TaxId: 727]
d1ja1b2 : (THR146) (GLY165) [view usage] : c.23.5.2 |Flavodoxin-like |Flavoproteins |Cytochrome p450 reductase N-terminal domain-like |NADPH-cytochrome p450 reductase, N-terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3qkvb_ : (ALA487) (PRO508) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3egwa1 : (PRO131) (SER161) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, e.8, c.1, c.67, c.81, i.1, b.30, b.47, c.56, c.117, c.66, c.80, c.124, c.14, c.72, c.23, c.7, d.104, c.18, e.6,
c.86, d.153, d.169, c.60, a.123, d.108, c.53, d.17, c.33, c.120, e.26, c.5