Tableau information
Concept source: d2r37b_ amino acid (a.a.) range (ILE115)(GLU136)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ILE115) (LYS120) H1
(LYS120) (GLY125) H2
(PHE132) (GLU136) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -60.4° H2
E3 140.3° 110.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1pz3a2 : (ILE134) (GLY173) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Alpha-L-arabinofuranosidase, catalytic domain |Bacillus stearothermophilus [TaxId: 1422]
d3qx1a_ : (ASP623) (ALA648) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nspa_ : (PHE135) (ALA156) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |automated matches |Erwinia chrysanthemi [TaxId: 198628]
d1mxaa2 : (PRO137) (PHE170) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Escherichia coli [TaxId: 562]
d1cyua_ : (THR13) (VAL47) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin A (stefin A) |Human (Homo sapiens) [TaxId: 9606]
d3cina2 : (THR249) (THR280) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |Hypothetical protein TM1419 |Thermotoga maritima [TaxId: 2336]
d2ex0b_ : (SER113) (ASP140) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |Alpha-2,3/2,6-sialyltransferase/sialidase |Pasteurella multocida [TaxId: 747]
d2a6oa_ : (LYS85) (THR115) [view usage] : d.58.57.1 |Ferredoxin-like |Transposase IS200-like |Transposase IS200-like |ISHP608 transposase |Helicobacter pylori [TaxId: 210]
d1xeaa2 : (ASP159) (SER193) [view usage] : d.81.1.5 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Glucose 6-phosphate dehydrogenase-like |Putative oxidoreductase VCA1048 |Vibrio cholerae [TaxId: 666]
d1qaxa1 : (LYS135) (ASP166) [view usage] : d.58.20.1 |Ferredoxin-like |NAD-binding domain of HMG-CoA reductase |NAD-binding domain of HMG-CoA reductase |NAD-binding domain of HMG-CoA reductase |Pseudomonas mevalonii [TaxId: 32044]
d1gzqa2 : (SER59) (ALA100) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Human (Homo sapiens), CD1b [TaxId: 9606]
d1xf8a2 : (ASP299) (ILE317) [view usage] : d.108.1.4 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |FemXAB nonribosomal peptidyltransferases |Peptidyltransferase FemX |Weissella viridescens [TaxId: 1629]
d1r6ya_ : (ILE69) (ILE99) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein YgiN |Escherichia coli [TaxId: 562]
d1mwwa_ : (GLU72) (PRO105) [view usage] : d.80.1.4 |Tautomerase/MIF |Tautomerase/MIF |Hypothetical protein HI1388.1 |Hypothetical protein HI1388.1 |Haemophilus influenzae [TaxId: 727]
d2ntba_ : (PHE135) (ALA156) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |automated matches |Erwinia chrysanthemi [TaxId: 198628]
d2zkqc1 : (PHE17) (VAL41) [view usage] : d.52.3.1 |Alpha-lytic protease prodomain-like |Prokaryotic type KH domain (KH-domain type II) |Prokaryotic type KH domain (KH-domain type II) |Ribosomal protein S3 N-terminal domain |Dog (Canis familiaris) [TaxId: 9615]
d1jmaa_ : (ASP6) (TYR38) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |HSV glycoprotein D |Herpes simplex virus type 1 [TaxId: 10298]
d4kttc2 : (LEU152) (VAL186) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Human (Homo sapiens), isoform type-2 [TaxId: 9606]
d1rkya3 : (ASP175) (SER214) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Lysyl oxidase PplO, domains 1 and 2 |Yeast (Pichia pastoris) [TaxId: 4922]
d1jdea3 : (GLU199) (GLN240) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d2r37a_ : (ILE115) (GLU136) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xq9a_ : (TRP141) (LEU162) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Phosphoglycerate mutase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d4je6b_ : (THR67) (LEU89) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2cx7a_ : (THR5) (VAL37) [view usage] : d.106.1.1 |SCP-like |SCP-like |Sterol carrier protein, SCP |automated matches |Thermus thermophilus [TaxId: 274]
d2h4zb_ : (TYR133) (LEU158) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zh8a2 : (GLY181) (ASP211) [view usage] : d.81.1.5 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Glucose 6-phosphate dehydrogenase-like |Hypothetical protein TM0312 |Thermotoga maritima [TaxId: 2336]
d4niaa_ : (VAL57) (MET76) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d2f8aa1 : (ILE90) (GLU111) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Glutathione peroxidase |Human (Homo sapiens) [TaxId: 9606]
d3i5va_ : (SER223) (ASP253) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 561307]
d2hgjm1 : (GLY24) (ASN56) [view usage] : c.21.1.1 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Thermus thermophilus [TaxId: 274]
d2cx7b_ : (THR5) (VAL37) [view usage] : d.106.1.1 |SCP-like |SCP-like |Sterol carrier protein, SCP |automated matches |Thermus thermophilus [TaxId: 274]
d2f90a_ : (HIS130) (LEU158) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3s44a_ : (SER113) (ASP140) [view usage] : c.87.1.9 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Sialyltransferase-like |automated matches |Pasteurella multocida [TaxId: 747]
d1gyhb_ : (PRO79) (ALA95) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1gyha_ : (PRO79) (ALA95) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1n3ya_ : (THR209) (THR239) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha-x beta2 |Human (Homo sapiens) [TaxId: 9606]
d3cwva2 : (ALA266) (SER306) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Myxococcus xanthus [TaxId: 246197]
d1n9ea3 : (ARG176) (SER214) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Lysyl oxidase PplO, domains 1 and 2 |Yeast (Pichia pastoris) [TaxId: 4922]
d1k2vn_ : (ASP61) (GLY82) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d2yhea1 : (PHE210) (LYS270) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas sp. [TaxId: 1007495]
d4je6a_ : (THR67) (LEU89) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4pe3a_ : (ALA138) (PRO170) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 349101]
d1x0va1 : (LYS49) (PRO77) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dika3 : (GLU199) (GLN240) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d1c47a4 : (ASP530) (THR561) [view usage] : d.129.2.1 |TBP-like |Phosphoglucomutase, C-terminal domain |Phosphoglucomutase, C-terminal domain |Phosphoglucomutase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1vbga3 : (ASP202) (CYS244) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Maize (Zea mays) [TaxId: 4577]
d1sija4 : (GLN700) (ALA747) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Aldehyde oxidoreductase |Desulfovibrio gigas [TaxId: 879]
d3hyla3 : (GLU528) (LYS549) [view usage] : c.48.1.0 |TK C-terminal domain-like |TK C-terminal domain-like |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d2qwza_ : (LYS7) (LYS32) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Silicibacter sp. [TaxId: 292414]
d4emba_ : (ASP133) (LEU157) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d1cwua_ : (LEU56) (VAL91) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Oil seed rape (Brassica napus) [TaxId: 3708]
d2g5fa1 : (GLY277) (GLY330) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d4lbpa_ : (TRP65) (ARG90) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Burkholderia cepacia [TaxId: 292]
d4lbha_ : (TRP65) (ARG90) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Burkholderia cepacia [TaxId: 292]
d1v7pc_ : (THR223) (THR253) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha2-beta1 |Human (Homo sapiens) [TaxId: 9606]
d1gyeb_ : (PRO79) (ALA95) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1pz2a2 : (ILE134) (GLY173) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Alpha-L-arabinofuranosidase, catalytic domain |Bacillus stearothermophilus [TaxId: 1422]
d2r37b_ : (ILE115) (GLU136) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.94, c.2, d.58, b.67, c.92, d.157, d.129, c.47, d.151, d.14, b.121, c.87, d.81, c.60, c.62, b.1, d.108, d.133,
d.17, d.38, d.19, d.106, d.167, d.142, c.48, d.15, d.130, d.52, d.80, d.161, c.21