Tableau information
Concept source: d1xpkc1 amino acid (a.a.) range (MET19)(PRO46)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET19) (GLN27) H1
(LYS32) (GLY38) H2
(THR40) (PRO46) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 117.5° H2
E3 88.6° 96.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ouoa_ : (ASN58) (TRP78) [view usage] : d.4.1.6 |His-Me finger endonucleases |His-Me finger endonucleases |Endonuclease I |Periplasmic endonuclease Vvn |Vibrio vulnificus [TaxId: 672]
d2du2a_ : (VAL337) (PRO369) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d2je8a4 : (THR58) (SER98) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |Beta-mannosidase |Bacteroides thetaiotaomicron [TaxId: 818]
d1xoxa_ : (TRP25) (THR48) [view usage] : g.52.1.1 |Inhibitor of apoptosis (IAP) repeat |Inhibitor of apoptosis (IAP) repeat |Inhibitor of apoptosis (IAP) repeat |Anti-apoptotic protein survivin |Human (Homo sapiens) [TaxId: 9606]
d2x42a1 : (GLU2) (VAL46) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-glucosidase |Thermotoga neapolitana [TaxId: 309803]
d2bekb_ : (VAL61) (THR86) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
d1wtea_ : (ASP91) (ARG115) [view usage] : c.52.1.29 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoO109IR |Restriction endonuclease EcoO109IR |Escherichia coli [TaxId: 562]
d1w9ab_ : (ASP98) (LEU134) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein Rv1155 |Mycobacterium tuberculosis [TaxId: 1773]
d3gdma_ : (THR5) (ASP37) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2pofa1 : (ASP32) (LYS68) [view usage] : d.13.1.4 |HIT-like |HIT-like |CDH-like |CDP-diacylglycerol pyrophosphatase CDH |Escherichia coli [TaxId: 562]
d3r3ma_ : (ASP623) (ALA648) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hq7b_ : (ARG92) (GLU124) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypotheical protein CAC3491 |Clostridium acetobutylicum [TaxId: 1488]
d2aj2a1 : (THR59) (GLY89) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein VC0467 |Vibrio cholerae [TaxId: 666]
d3h9da_ : (SER5) (LYS37) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1ac5a_ : (ALA10) (ARG37) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |Serine carboxypeptidase II |Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
d1d0na1 : (SER127) (LYS142) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |Gelsolin |Horse (Equus caballus) [TaxId: 9796]
d2doaa1 : (ALA29) (LEU67) [view usage] : a.4.5.81 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ELL N2 domain-like |RNA polymerase II elongation factor ELL |Human (Homo sapiens) [TaxId: 9606]
d4exlc_ : (PHE88) (ASN115) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
d2x40a1 : (GLU2) (VAL46) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |automated matches |Thermotoga neapolitana [TaxId: 309803]
d3fw1a_ : (CYS121) (LEU144) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |Quinone reductase type 2 (menadione reductase) |Human (Homo sapiens) [TaxId: 9606]
d2mpfa_ : (CYS535) (VAL564) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3d32b_ : (PHE5) (LYS37) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |GABA(A) receptor associated protein GABARAP |Human (Homo sapiens) [TaxId: 9606]
d1sxjd2 : (TYR172) (ALA191) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication factor C2 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2hafa1 : (THR61) (GLY91) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein VC0467 |Vibrio cholerae [TaxId: 666]
d1aela_ : (ASN13) (GLU43) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2fiab_ : (LEU11) (LEU55) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Probable acetyltransferase EF1919 |Enterococcus faecalis [TaxId: 1351]
d4exld_ : (PHE88) (ASN115) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
d2zpnc_ : (THR4) (LYS35) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2dj0a_ : (TYR70) (GLN95) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wxaa1 : (ALA36) (LEU64) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |Afadin |Mouse (Mus musculus) [TaxId: 10090]
d2wnya_ : (ARG59) (LEU94) [view usage] : d.77.1.0 |RL5-like |RL5-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
d4fxyp_ : (SER193) (LEU220) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1s4bp_ : (THR192) (LEU219) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Neurolysin (endopeptidase 24.16, thimet oligopeptidase) |Human (Homo sapiens) [TaxId: 9606]
d2ycpa_ : (CYS218) (SER254) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |automated matches |Citrobacter freundii [TaxId: 546]
d2qjga_ : (GLU2) (VAL30) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d3d0sb1 : (GLY991) (ARG33) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1gnua_ : (PHE3) (LYS35) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |GABA(A) receptor associated protein GABARAP |Human (Homo sapiens) [TaxId: 9606]
d1neka3 : (LEU327) (PRO351) [view usage] : d.168.1.1 |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |Succinate dehydogenase |Escherichia coli [TaxId: 562]
d1sb7a_ : (ARG269) (ALA300) [view usage] : d.265.1.4 |Pseudouridine synthase |Pseudouridine synthase |tRNA pseudouridine synthase TruD |tRNA pseudouridine synthase TruD |Escherichia coli [TaxId: 562]
d3r3mb_ : (ASP623) (ALA648) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cx4a1 : (THR136) (GLU175) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Regulatory subunit of Protein kinase A |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1hksa_ : (PRO47) (ASN79) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1ofha_ : (ARG315) (THR334) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |HslU |Haemophilus influenzae [TaxId: 727]
d1zyba2 : (MSE1) (HIS36) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Probable transcription regulator BT4300, N-terminal domain |Bacteroides thetaiotaomicron [TaxId: 818]
d3j3az2 : (GLN365) (SER399) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor 2 (eEF-2), domain II |Homo sapiens [TaxId: 9606]
d2q91a_ : (PRO4) (LYS31) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Human (Homo sapiens), s100a4 [TaxId: 9606]
d3r3mc_ : (ASP623) (ALA648) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.67, c.69, c.94, d.92, c.23, c.37, c.47, c.95, b.60, b.18, b.45, d.108, c.52, a.4, a.39, d.168, d.109, g.52,
d.15, b.43, d.13, d.4, d.265, d.77, d.310