Tableau information
Concept source: d3hu5a_ amino acid (a.a.) range (GLY31)(ARG61)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY31) (VAL36) H1
(VAL36) (GLY50) H2
(MSE52) (ARG61) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -42.2° H2
E3 -143.6° -129.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1qsca1 : (ASP450) (CYS469) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 2 (TRAF2) |Human (Homo sapiens) [TaxId: 9606]
d4bofa_ : (SER182) (VAL210) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d2g0jb_ : (ILE74) (THR110) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein Smu.848 |Streptococcus mutans [TaxId: 1309]
d1dysa_ : (ALA150) (LEU179) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6b [TaxId: 34413]
d1g0oc_ : (VAL177) (GLY209) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
d4lacb_ : (ARG173) (GLY205) [view usage] : a.268.1.1 |PTPA-like |PTPA-like |PTPA-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2vsuc_ : (GLY119) (ASP135) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 294]
d1vs6y1 : (PRO41) (GLU58) [view usage] : d.59.1.1 |Ribosomal protein L30p/L7e |Ribosomal protein L30p/L7e |Ribosomal protein L30p/L7e |Prokaryotic ribosomal protein L30 |Escherichia coli [TaxId: 562]
d1qftb_ : (ASN11) (MET31) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Histamine binding protein |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d1b8ma_ : (ASN59) (CYS80) [view usage] : g.17.1.3 |Cystine-knot cytokines |Cystine-knot cytokines |Neurotrophin |Brain-derived neurotrophic factor, BDNF |Human (Homo sapiens) [TaxId: 9606]
d3dyca_ : (ALA182) (GLY205) [view usage] : c.76.1.1 |Alkaline phosphatase-like |Alkaline phosphatase-like |Alkaline phosphatase |Alkaline phosphatase |Escherichia coli [TaxId: 562]
d1qfta_ : (ASN11) (MET31) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Histamine binding protein |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d1g59a2 : (ARG81) (PHE106) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutamyl-tRNA synthetase (GluRS) |Thermus thermophilus [TaxId: 274]
d2g0jc_ : (ILE74) (GLN111) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein Smu.848 |Streptococcus mutans [TaxId: 1309]
d4ntla_ : (PRO139) (LYS158) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
d2pzka_ : (ASP81) (PHE114) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
d1twye_ : (GLU250) (PRO276) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ABC transporter, periplasmic substrate-binding protein VCA0807 |Vibrio cholerae [TaxId: 666]
d2aeua1 : (ASP308) (ILE331) [view usage] : c.67.1.8 |PLP-dependent transferase-like |PLP-dependent transferases |SelA-like |Hypothetical protein MJ0158 |Methanococcus jannaschii [TaxId: 2190]
d2icga1 : (MSE1) (SER23) [view usage] : d.369.1.1 |SMI1/KNR4-like |SMI1/KNR4-like |SMI1/KNR4-like |Uncharacterized protein Lin2918 |Listeria innocua [TaxId: 1642]
d1yrqa_ : (GLY53) (GLY76) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d2j5ik_ : (PHE118) (CYS133) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 294]
d1oywa1 : (THR495) (ALA511) [view usage] : a.4.5.43 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |RecQ helicase DNA-binding domain-like |DNA helicase RecQ DNA-binding domain |Escherichia coli [TaxId: 562]
d2gq0a_ : (ASP462) (SER482) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3g7xa_ : (ASN11) (MET31) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d4mdoa_ : (ASP195) (GLY236) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Humicola grisea [TaxId: 5528]
d4bofe_ : (SER182) (VAL210) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1zm8a_ : (THR151) (PRO182) [view usage] : d.4.1.2 |His-Me finger endonucleases |His-Me finger endonucleases |DNA/RNA non-specific endonuclease |Nuclease NucA |Nostoc sp. PCC 7120 [TaxId: 103690]
d1e9ia1 : (ASP293) (GLY315) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Escherichia coli [TaxId: 562]
d3g7xb_ : (ASN11) (MET31) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d1mpxa2 : (ALA279) (GLY304) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |Alpha-amino acid ester hydrolase |Xanthomonas citri [TaxId: 346]
d1ar1a_ : (TYR406) (TRP443) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Paracoccus denitrificans [TaxId: 266]
d3uorb_ : (PRO64) (GLY88) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d1p16a2 : (GLU49) (GLU66) [view usage] : d.142.2.3 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |mRNA capping enzyme |mRNA capping enzyme alpha subunit |Yeast (Candida albicans) [TaxId: 5476]
d2xtkb_ : (CYS100) (SER120) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
d6icda_ : (PRO85) (PRO102) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |Isocitrate dehydrogenase, ICDH |Escherichia coli [TaxId: 562]
d1pcaa1 : (PRO57) (ILE77) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase A |Pig (Sus scrofa) [TaxId: 9823]
d4bvhb_ : (ARG301) (GLY319) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1iria_ : (GLY384) (PRO409) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Human (Homo sapiens) [TaxId: 9606]
d1yfea_ : (LYS264) (PRO312) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1doha_ : (VAL177) (GLY209) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
d1ca4a1 : (ASP450) (CYS469) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 2 (TRAF2) |Human (Homo sapiens) [TaxId: 9606]
d2y8ua_ : (GLY74) (ALA96) [view usage] : c.6.2.0 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |automated matches |automated matches |Emericella nidulans [TaxId: 162425]
d2qhfa_ : (LEU186) (ALA227) [view usage] : d.258.1.0 |Chorismate synthase, AroC |Chorismate synthase, AroC |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1vcoa2 : (ASP158) (LEU191) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |CTP synthase PyrG, N-terminal domain |Thermus thermophilus [TaxId: 274]
d1v7nv_ : (ASP8) (PRO34) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Thrombopoietin |Human (Homo sapiens) [TaxId: 9606]
d1czya1 : (ASP450) (CYS469) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 2 (TRAF2) |Human (Homo sapiens) [TaxId: 9606]
d2g0ib_ : (ILE74) (THR110) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein Smu.848 |Streptococcus mutans [TaxId: 1309]
d1f0ka_ : (GLY132) (ALA148) [view usage] : c.87.1.2 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Peptidoglycan biosynthesis glycosyltransferase MurG |Peptidoglycan biosynthesis glycosyltransferase MurG |Escherichia coli [TaxId: 562]
d2y8ub_ : (GLY74) (ALA96) [view usage] : c.6.2.0 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |automated matches |automated matches |Emericella nidulans [TaxId: 162425]
d1ybva_ : (VAL177) (GLY210) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
d3dlka1 : (THR27) (GLY51) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d3r5ta_ : (PHE84) (TRP100) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d4mnpa_ : (ASP91) (ALA121) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Fusobacterium nucleatum [TaxId: 190304]
d1g0oa_ : (VAL177) (GLY209) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, c.69, c.94, c.2, c.76, c.6, d.58, c.26, c.92, c.80, c.77, c.14, a.127, c.37, b.60, d.14, c.87, c.31,
d.126, f.24, c.33, d.142, a.4, e.19, a.26, d.4, g.17, d.64, a.268, d.258, b.8, d.369, d.59