Tableau information
Concept source: d1tlfa_ amino acid (a.a.) range (SER221)(GLY261)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER221) (GLY236) H1
(THR240) (ALA245) E2
(ASN246) (GLY261) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 148.2° E2
H3 -40.7° 153.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1t6by_ : (PRO156) (ILE189) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Capillary morphogenesis protein 2 domain |Human (Homo sapiens) [TaxId: 9606]
d3j38c_ : (ALA190) (TYR233) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1visa1 : (GLY71) (ASN128) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Mevalonate kinase |Methanococcus jannaschii [TaxId: 2190]
d1dr0a_ : (LYS159) (PRO207) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Thermus thermophilus [TaxId: 274]
d3l0gb2 : (ILE108) (GLY148) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
d3m7ne1 : (ASP95) (GLY152) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d3tnla1 : (LEU55) (LEU84) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d1sxgb_ : (ASP160) (GLY208) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Glucose-resistance amylase regulator CcpA, C-terminal domain |Bacillus megaterium [TaxId: 1404]
d2jt2a2 : (GLU222) (LYS268) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d2pnza1 : (ASP95) (ALA151) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Pyrococcus abyssi [TaxId: 29292]
d1vhla_ : (HIS89) (LYS123) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Dephospho-CoA kinase |Escherichia coli [TaxId: 562]
d1piea1 : (SER101) (ASN155) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Galactokinase |Lactococcus lactis [TaxId: 1358]
d1s4ef1 : (ILE70) (ASN123) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Galactokinase |Pyrococcus furiosus [TaxId: 2261]
d1rm6a2 : (MET728) (ALA768) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain |Thauera aromatica [TaxId: 59405]
d2yivx_ : (VAL600) (GLY633) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d1dr8a_ : (SER158) (PRO207) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Thermus thermophilus [TaxId: 274]
d2or2a_ : (THR90) (VAL138) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |automated matches |Bacillus thuringiensis [TaxId: 1428]
d6abpa_ : (SER255) (GLY302) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |L-arabinose-binding protein |Escherichia coli [TaxId: 562]
d1udoa1 : (GLU103) (GLY148) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Ribonuclease PH, domain 1 |Aquifex aeolicus [TaxId: 63363]
d1nfpa_ : (PHE174) (GLU224) [view usage] : c.1.16.2 |TIM beta/alpha-barrel |Bacterial luciferase-like |Non-fluorescent flavoprotein (luxF, FP390) |Non-fluorescent flavoprotein (luxF, FP390) |Photobacterium leiognathi [TaxId: 553611]
d3s9yd_ : (HIS274) (ASN320) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Plasmodium falciparum [TaxId: 36329]
d1dika1 : (PRO838) (LYS874) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Clostridium symbiosum [TaxId: 1512]
d1vp2a_ : (THR44) (MET83) [view usage] : c.51.4.1 |Anticodon-binding domain-like |ITPase-like |ITPase (Ham1) |Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 |Thermotoga maritima [TaxId: 2336]
d3l0ga2 : (ILE108) (GLY148) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
d2radb_ : (ASN63) (GLY106) [view usage] : c.150.1.3 |EreA/ChaN-like |EreA/ChaN-like |EreA-like |Succinoglycan biosynthesis protein BC3120 |Bacillus cereus [TaxId: 1396]
d3fefa1 : (VAL127) (PHE164) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1e4ia_ : (ARG331) (ASP388) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Bacillus polymyxa [TaxId: 1406]
d4peqd_ : (PRO101) (ASP134) [view usage] : c.10.1.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |RNI-like |28-residue LRR |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2bwja_ : (GLY73) (ARG110) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vs6n1 : (HIS16) (THR57) [view usage] : d.188.1.1 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Prokaryotic ribosomal protein L17 |Escherichia coli [TaxId: 562]
d1q85a2 : (PRO251) (VAL286) [view usage] : c.1.26.1 |TIM beta/alpha-barrel |Homocysteine S-methyltransferase |Homocysteine S-methyltransferase |Cobalamin-dependent methionine synthase MetH, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d4v19r_ : (GLY21) (GLY66) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d2iera2 : (GLU234) (LYS278) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d1z5cb2 : (ASP386) (GLU463) [view usage] : d.14.1.3 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |DNA gyrase/MutL, second domain |Topoisomerase VI-B subunit |Sulfolobus shibatae [TaxId: 2286]
d3s9ya_ : (HIS274) (GLU322) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Plasmodium falciparum [TaxId: 36329]
d3kked_ : (ASP161) (GLY207) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1tr1a_ : (ARG331) (ASP388) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Bacillus polymyxa [TaxId: 1406]
d5ptda_ : (THR90) (VAL138) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Bacillus cereus [TaxId: 1396]
d2x0ia1 : (THR108) (SER153) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d3fgcd_ : (THR275) (LEU325) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |automated matches |Vibrio harveyi [TaxId: 669]
d1bgaa_ : (ARG331) (ASP388) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Bacillus polymyxa [TaxId: 1406]
d4o5hc_ : (ASP289) (SER335) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d3apga_ : (GLU351) (GLY401) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Pyrococcus furiosus [TaxId: 2261]
d2xzme_ : (ALA182) (TYR225) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d6ptda_ : (THR90) (VAL138) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Bacillus cereus [TaxId: 1396]
d1yh8a2 : (GLU234) (GLN279) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d1z69a_ : (THR284) (LYS327) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Methanosarcina barkeri [TaxId: 2208]
d2rada1 : (ASN63) (GLY106) [view usage] : c.150.1.3 |EreA/ChaN-like |EreA/ChaN-like |EreA-like |Succinoglycan biosynthesis protein BC3120 |Bacillus cereus [TaxId: 1396]
d2cz9a1 : (ILE68) (TYR120) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1b5tb_ : (ALA246) (GLY291) [view usage] : c.1.23.1 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Methylenetetrahydrofolate reductase |Methylenetetrahydrofolate reductase |Escherichia coli [TaxId: 562]
d1shux_ : (VAL155) (ILE189) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Capillary morphogenesis protein 2 domain |Human (Homo sapiens) [TaxId: 9606]
d2ba1d1 : (ASP95) (GLY152) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease 1, ECX1 |Archaeoglobus fulgidus [TaxId: 2234]
d1rm6d2 : (MET728) (ALA768) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain |Thauera aromatica [TaxId: 59405]
d1zvka_ : (GLU39) (ILE83) [view usage] : c.41.1.2 |Subtilisin-like |Subtilisin-like |Serine-carboxyl proteinase, SCP |automated matches |Alicyclobacillus sendaiensis [TaxId: 192387]
d1qr5a_ : (MET48) (GLU88) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Histidine-containing phosphocarrier protein (HPr) |Staphylococcus carnosus [TaxId: 1281]
d2y40a_ : (LYS159) (PRO207) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Thermus thermophilus [TaxId: 274]
d1b5ta_ : (ASP245) (GLY291) [view usage] : c.1.23.1 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Methylenetetrahydrofolate reductase |Methylenetetrahydrofolate reductase |Escherichia coli [TaxId: 562]
d1cl2b_ : (ASP165) (GLY200) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Cystathionine beta-lyase, CBL |Escherichia coli [TaxId: 562]
d3b55a_ : (ASN63) (LYS105) [view usage] : c.150.1.3 |EreA/ChaN-like |EreA/ChaN-like |EreA-like |Succinoglycan biosynthesis protein BC3120 |Bacillus cereus [TaxId: 1396]
d3gvha1 : (SER88) (GLY135) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d2pbga_ : (GLU352) (GLY412) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |6-phospho-beta-D-galactosidase, PGAL |Lactococcus lactis [TaxId: 1358]
d1t3qb2 : (GLU743) (ARG785) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Quinoline 2-oxidoreductase large subunit QorL |Pseudomonas putida [TaxId: 303]
d1jqka_ : (ALA605) (GLY636) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Rhodospirillum rubrum [TaxId: 1085]
d1udsa1 : (GLU103) (GLY148) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Ribonuclease PH, domain 1 |Aquifex aeolicus [TaxId: 63363]
d3dbia_ : (THR225) (GLY265) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2jffa2 : (MET390) (LEU436) [view usage] : c.59.1.0 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1u25c_ : (THR217) (PRO261) [view usage] : c.45.1.4 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA |Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA |Selenomonas ruminantium [TaxId: 971]
d1i59b_ : (SER359) (ILE415) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase CheA |Thermotoga maritima [TaxId: 2336]
d1udqa1 : (GLU103) (GLY148) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Ribonuclease PH, domain 1 |Aquifex aeolicus [TaxId: 63363]
d1dzia_ : (MET262) (ALA304) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha2-beta1 |Human (Homo sapiens) [TaxId: 9606]
d2jfga2 : (MET390) (GLU435) [view usage] : c.59.1.0 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3di1a_ : (GLU196) (GLN225) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d4i1ia1 : (ALA105) (ALA143) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Leishmania major [TaxId: 347515]
d2depb_ : (ALA102) (TYR173) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Clostridium stercorarium [TaxId: 1510]
d3wdpp_ : (GLU351) (GLY401) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1mx0d2 : (VAL387) (ALA464) [view usage] : d.14.1.3 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |DNA gyrase/MutL, second domain |Topoisomerase VI-B subunit |Sulfolobus shibatae [TaxId: 2286]
d2depa_ : (ALA102) (TYR173) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Clostridium stercorarium [TaxId: 1510]
d4gaca_ : (HIS87) (GLU148) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3rysb_ : (PHE182) (HIS217) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]
d1v6aa1 : (SER105) (LYS149) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Carp (Cyprinus carpio) [TaxId: 7962]
d3h5oa_ : (SER230) (ALA262) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.67, c.2, i.1, c.82, c.77, c.93, c.45, d.122, c.37, d.14, c.62, d.133, c.41, c.51, c.59, e.26, c.58, d.94,
c.150, d.188