Tableau information
Concept source: d1lmza_ amino acid (a.a.) range (VAL116)(PRO136)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: HEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL116) (ASN121) H1
(PRO124) (GLN128) E2
(THR131) (PRO136) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 73.1° E2
H3 74.0° 127.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1zj8a2 : (ILE86) (ARG122) [view usage] : d.58.36.1 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |Duplicated SiR/NiR-like domains 1 and 3 |Sulfite reductase NirA |Mycobacterium tuberculosis [TaxId: 1773]
d2xnud_ : (SER132) (ILE152) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d3h3ub2 : (ASP145) (GLY185) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3d0sb2 : (ASP145) (GLY185) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4i2ta_ : (PRO40) (LEU65) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Chlorella sorokiniana [TaxId: 3076]
d2ljaa_ : (THR99) (GLY143) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides vulgatus [TaxId: 435590]
d3tqxa_ : (PRO360) (GLY394) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Coxiella burnetii [TaxId: 227377]
d2x18e_ : (TRP79) (GLU115) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qgxb_ : (SER118) (LEU158) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ugja1 : (PHE14) (GLN60) [view usage] : d.284.1.2 |PurS-like |PurS-like |FGAM synthase PurL, PurS-like domain |FGAM synthase PurL, PurS-like domain |Salmonella enterica [TaxId: 90371]
d2yhka_ : (GLY382) (GLN429) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |automated matches |Citrobacter freundii [TaxId: 546]
d1nfsb_ : (ASN132) (ALA153) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Isopentenyl diphosphate isomerase |Escherichia coli [TaxId: 562]
d3vupa_ : (SER241) (GLY284) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aplysia kurodai [TaxId: 6501]
d1oc9b_ : (ARG110) (PRO151) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin II |Crithidia fasciculata [TaxId: 5656]
d3fcca_ : (PRO471) (ALA504) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
d1nike_ : (HIS147) (TYR168) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |Complete 12-subunit RNA polymerase II complex |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3bkra_ : (PRO67) (LYS88) [view usage] : d.106.1.0 |SCP-like |SCP-like |automated matches |automated matches |Yellow fever mosquito (Aedes aegypti) [TaxId: 7159]
d1h7aa_ : (ASP67) (ASN90) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d3d0za1 : (GLU37) (LYS78) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Schistosoma japonicum [TaxId: 6182]
d2bwod_ : (PRO367) (TRP397) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d2heka1 : (SER340) (LYS369) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein aq_1910 |Aquifex aeolicus [TaxId: 63363]
d4i5qa2 : (ALA168) (GLN212) [view usage] : c.47.1.9 |Thioredoxin fold |Thioredoxin-like |DsbC/DsbG C-terminal domain-like |automated matches |Salmonella typhimurium [TaxId: 99287]
d2bwpa_ : (PRO367) (LEU396) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d2wfca_ : (ALA117) (ASP136) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Arenicola marina [TaxId: 6344]
d2r1ra2 : (PRO501) (GLY528) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Escherichia coli [TaxId: 562]
d1h4pa_ : (LEU221) (TYR247) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Exo-beta-(1,3)-glucanase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1b23p1 : (SER294) (THR311) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor Tu (EF-Tu), domain 2 |Thermus aquaticus [TaxId: 271]
d1rrva_ : (ASP184) (PRO204) [view usage] : c.87.1.5 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Gtf glycosyltransferase |TDP-vancosaminyltransferase GftD |Amycolatopsis orientalis [TaxId: 31958]
d1q18a2 : (LYS288) (GLY318) [view usage] : c.55.1.7 |Ribonuclease H-like motif |Actin-like ATPase domain |Glucokinase |Glucokinase Glk |Escherichia coli [TaxId: 562]
d1ukfa_ : (SER81) (MET108) [view usage] : d.3.1.10 |Cysteine proteinases |Cysteine proteinases |Avirulence protein Avrpph3 |Avirulence protein Avrpph3 |Pseudomonas syringae pv. phaseolicola [TaxId: 319]
d1irfa_ : (MET8) (ASP51) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor-2, IRF-2 |Mouse (Mus musculus) [TaxId: 10090]
d1ofda3 : (ILE119) (GLY156) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Alpha subunit of glutamate synthase, N-terminal domain |Synechocystis sp. [TaxId: 1143]
d3gfpa_ : (ASN300) (LEU327) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3vo9a2 : (ASP210) (SER246) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |Cell-division protein FtsZ |Staphylococcus aureus [TaxId: 158878]
d2x89a_ : (GLU87) (ILE107) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d1z5ye1 : (GLN61) (GLN96) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thioredoxin-like protein CcmG (CycY, DsbE) |Escherichia coli [TaxId: 562]
d1gwya_ : (ASP107) (ASN138) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Sticholysin II |Carribean sea anemone (Stoichactis helianthus) [TaxId: 6123]
d3wwoa_ : (ILE163) (LEU186) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Baliospermum montanum [TaxId: 316758]
d1hyua4 : (PHE159) (VAL195) [view usage] : c.47.1.2 |Thioredoxin fold |Thioredoxin-like |PDI-like |Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain |Salmonella typhimurium [TaxId: 90371]
d1m04a1 : (ASP421) (MET455) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |beta-N-acetylhexosaminidase |Streptomyces plicatus [TaxId: 1922]
d1hp4a1 : (ASP421) (MET455) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |beta-N-acetylhexosaminidase |Streptomyces plicatus [TaxId: 1922]
d3crta1 : (GLY38) (ASN80) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class alpha GST |Schistosoma japonicum [TaxId: 6182]
d1yl3k1 : (GLN57) (GLN105) [view usage] : d.99.1.1 |Ribosomal protein L9 C-domain |Ribosomal protein L9 C-domain |Ribosomal protein L9 C-domain |Ribosomal protein L9 C-domain |Thermus thermophilus [TaxId: 274]
d2ox7a1 : (CYS121) (GLU145) [view usage] : b.172.1.1 |YopX-like |YopX-like |YopX-like |Hypothetical protein EF1440 |Enterococcus faecalis [TaxId: 1351]
d1o7ua_ : (SER94) (ASP134) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin I |Crithidia fasciculata [TaxId: 5656]
d2bwpb_ : (PRO367) (LEU396) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d3dina3 : (PRO542) (ARG570) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Translocation ATPase SecA, nucleotide-binding domains |Thermotoga maritima MSB8 [TaxId: 243274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, d.58, a.211, c.37, c.7, c.47, c.55, d.153, d.3, c.87, a.96, b.1, e.23, d.20, b.96, d.106, b.55, d.79,
a.4, b.97, b.43, i.8, d.113, d.284, b.172, d.99